PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0550200.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 267aa MW: 29933.4 Da PI: 8.0211

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0550200.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	79.1	4.9e-25	90	147	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrK Gq++ kg+ +pr Y+ Ct+agCpv+k ver+ ++ k v++tY+g+Hnhe Lj5g3v0550200.1 90 DDGYRWRKSGQRPSKGNLMPRRYFMCTTAGCPVRKTVERNLHNLKNVITTYKGRHNHE 147 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-26	77	149	IPR003657	WRKY domain
PROSITE profile	PS50811	29.103	84	149	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-22	86	149	IPR003657	WRKY domain
SMART	SM00774	3.6E-22	89	148	IPR003657	WRKY domain
Pfam	PF03106	2.6E-19	90	147	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MPMYCYKEAG AKVDEGRPVT ENLQLGGKSN KNKVTQGSTS PSKEVDVAVV AHDSGSKRKS 60 LDYYNKALLR LIHPLPKVEV QVESIVDVPD DGYRWRKSGQ RPSKGNLMPR RYFMCTTAGC 120 PVRKTVERNL HNLKNVITTY KGRHNHEVPL EKHKDCSINV DDFHKAANSL RTVAMSGNAN 180 IRGPEANQED ENDFLRLTLG QNFNNDHVNV RSSSTNHIPG PEANQEDDND FLRLTLGQNF 240 NIDHVNVRSS STNQIPSINL EKDGDDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-23	80	149	8	77	Probable WRKY transcription factor 4
2lex_A	6e-23	80	149	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0550200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-29	WRKY DNA-binding protein 33