PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0526310.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 276aa    MW: 30147.7 Da    PI: 8.9292
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0526310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46e-3244101359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                       v +keClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgC RnFHRr+++ 
  Lj5g3v0526310.1  44 VVSFKECLKNHAASLGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCPRNFHRRDPSA 101
                      589**************************99999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-264598IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2145105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-294798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0484798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.37E-16158229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27162229IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-25169225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDLTSSLDPD TQTTPPPTYP TSFTNGTHKH TTTAPPQRPP SMVVVSFKEC LKNHAASLGG  60
HALDGCGEFM PSSSTNPTDP RSLKCAACGC PRNFHRRDPS AQTPPQPLPH HGMSRSTSPS  120
LSSSQSPSPI SSPSPPPLSH MPPSASAVPQ MLLALGTAFS TPPENPTAKK RQRTKFTMEQ  180
KEKMQSFSEK LGWRMQKDDG LVQKFCNDIG VSRGVFKVWM HNNKNSFRRR SQDQGDAPPP  240
PPQTEKNHGG CFDSDINNND IHMNQDHSTV NVHFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201702261875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0526310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507232.12e-89zinc-finger homeodomain protein 11
SwissprotQ9LXG01e-54ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3UMK25e-88A0A1S3UMK2_VIGRR; zinc-finger homeodomain protein 11
STRINGXP_007158652.12e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-50homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]