PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0483800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 26892.4 Da PI: 8.5901 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.9 | 2.1e-28 | 71 | 129 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ k++ pr+Y+rC++a +Cp+kkkv+r+++d +++ tY geHnh+ Lj5g3v0483800.1 71 KDGYQWRKYGQKVTKDNGSPRAYFRCSMApTCPAKKKVQRCTHDRSILAATYDGEHNHS 129 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.076 | 65 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 67 | 129 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-28 | 68 | 129 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-30 | 70 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-23 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLEVLSSKCR KLESQLEEIN KNEQKGISSY QIESLSNHVS SKRARLEFPT VKKPLEIFFR 60 TLPNDDTLLI KDGYQWRKYG QKVTKDNGSP RAYFRCSMAP TCPAKKKVQR CTHDRSILAA 120 TYDGEHNHSA LDDSFRPSSS TPKGSSIANN LSPTIIPYDK EAMNNVFAIS DWAQTNARLY 180 EDVIPQHVHG SNIKIEDYIS SVIKDPDFTT ALAEAVAHII TGQHKRQSLN LNLDIPKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-18 | 69 | 128 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0483800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206660.1 | 1e-106 | probable WRKY transcription factor 40 | ||||
Refseq | XP_020206662.1 | 1e-106 | probable WRKY transcription factor 40 | ||||
Refseq | XP_027939733.1 | 1e-106 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A371HC05 | 1e-112 | A0A371HC05_MUCPR; Putative WRKY transcription factor 40 (Fragment) | ||||
STRING | XP_004498813.1 | 1e-104 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-39 | WRKY DNA-binding protein 40 |