PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0473570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 323aa    MW: 35571.6 Da    PI: 6.7052
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0473570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-07851442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +++ +++lfC+ + q+lC  C +++H        H +vpl
  Lj5g3v0473570.1  8 KMCDSCKSSPATLFCRAD-QPLCFPCDSTIHAAnklasrHPRVPL 51
                     68***************8.6***********66788888988886 PP
2zf-B_box27.94.8e-094994342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Lj5g3v0473570.1 49 VPLCEVCEQAPASVTCKADAASLCVSCDHDIHSAnplarrHERVPI 94
                     689*****************************66899999*99997 PP
3CCT69.87e-24258301144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lj5g3v0473570.1 258 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRS 301
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.617551IPR000315B-box-type zinc finger
SMARTSM003362.7E-10551IPR000315B-box-type zinc finger
PfamPF006432.9E-5851IPR000315B-box-type zinc finger
CDDcd000211.43E-7951No hitNo description
PROSITE profilePS5011910.6944794IPR000315B-box-type zinc finger
PfamPF006434.2E-74994IPR000315B-box-type zinc finger
CDDcd000218.27E-85094No hitNo description
SMARTSM003362.4E-95294IPR000315B-box-type zinc finger
PfamPF062031.3E-17258300IPR010402CCT domain
PROSITE profilePS5101716.797258300IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAITTTTKMC DSCKSSPATL FCRADQPLCF PCDSTIHAAN KLASRHPRVP LCEVCEQAPA  60
SVTCKADAAS LCVSCDHDIH SANPLARRHE RVPIAPFHHH NHNTTYLSDA DAADVTTDEA  120
EAASWLLPTP SNPKGPDLNS SHYSYSEIDT VELDFTKIDS PEHNSAATAD GVVPVQSQSK  180
ITTIEHHYDN DANNQIDFPT SKPFAHNYNA KSHYHAVSSP SMEVGVVPDG NAMSEISYCC  240
YGTPAPAVEA VQFSAADREA RVLRYREKRK NRRFEKTIRY ASRKAYAETR PRIKGRFAKR  300
SDVNVNLLTE EDPFSGYGVV PTC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.114310.0cell culture| floral bud| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0473570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045130.0AP004513.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT01O22, TM0043a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498823.11e-156zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T92e-89COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1S2Y3K21e-154A0A1S2Y3K2_CICAR; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_004498823.11e-155(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.14e-87CONSTANS-like 4