PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0405080.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 524aa MW: 58613 Da PI: 8.4305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0405080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H Lj5g3v0405080.1 80 FICEICNKGFRRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12.5	0.00045	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +++ Lj5g3v0405080.1 157 WKCEKCSKRYAVQSDWKAHSKVC 179 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.36E-7	79	102	No hit	No description
SMART	SM00355	0.012	80	102	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.5E-5	80	102	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.928	80	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	97	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	145	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.36E-7	152	177	No hit	No description
SMART	SM00355	130	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MKRGMVVDEN MSNLTSASSE VSASSEIRNE NGSLYPQLYS SNATNQEPQP KRKRSLPGHP 60 DPEAEVMALS PQTLMATNRF ICEICNKGFR RDQNLQLHRR GHNLPWKLKK RNGNEPIRRK 120 VYVCPEPTCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCE KCSKRYAVQS DWKAHSKVCG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALAH DSTSAITALN PLLSSHTQIL SHMHSSNGLQ 240 APPVKREQDF NLRPEIPSWL ACSTSVPPPP LLQTHLDQSF VIHHENPNPS TTLLPHHLNN 300 STSSNYPHMS ATDFLQKASQ IGVTVSKTTT PSPSPFMLRP HMMMQQQVHV PEMVMASSSA 360 VSGIVMPSRD EIGTGGYFTH GLASYGNKAA ITSGYFEADQ ASCLYHDMMG GTVPQTYERD 420 MFMRVSHQQV LGSKPAESTQ EMFMRGMFNP TRDADDGNFE YELVSKSTQP QFSKSDKVSS 480 GGAGDDEMTR DFLSLRAFSH MSGLDPLGSL SYGKQNHDHA QWQG

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MKRGMVVDEN MSNLTSASSE VSASSEIRNE NGSLYPQLYS SNATNQEPQP KRKRSLPGHP  60
DPEAEVMALS PQTLMATNRF ICEICNKGFR RDQNLQLHRR GHNLPWKLKK RNGNEPIRRK  120
VYVCPEPTCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCE KCSKRYAVQS DWKAHSKVCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAH DSTSAITALN PLLSSHTQIL SHMHSSNGLQ  240
APPVKREQDF NLRPEIPSWL ACSTSVPPPP LLQTHLDQSF VIHHENPNPS TTLLPHHLNN  300
STSSNYPHMS ATDFLQKASQ IGVTVSKTTT PSPSPFMLRP HMMMQQQVHV PEMVMASSSA  360
VSGIVMPSRD EIGTGGYFTH GLASYGNKAA ITSGYFEADQ ASCLYHDMMG GTVPQTYERD  420
MFMRVSHQQV LGSKPAESTQ EMFMRGMFNP TRDADDGNFE YELVSKSTQP QFSKSDKVSS  480
GGAGDDEMTR DFLSLRAFSH MSGLDPLGSL SYGKQNHDHA QWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	153	211	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-32	153	211	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0405080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019458212.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X2
Swissprot	Q8H1F5	1e-112	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A4P1R6S3	0.0	A0A4P1R6S3_LUPAN; Uncharacterized protein
STRING	VIT_04s0008g01160.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-108	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]