PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0176630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 297aa    MW: 32585 Da    PI: 9.9768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0176630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05157179223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg++F+  ++L+ H+ + H
  Lj5g3v0176630.1 157 VCSQCGEVFPKMESLELHQAVrH 179
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280156179IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891156184IPR007087Zinc finger, C2H2
SuperFamilySSF563991.21E-9181294No hitNo description
Gene3DG3DSA:3.90.228.107.8E-5183294IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRSRLISRNQ NHISNNRSRS RLTSRDQIKN LISCKQIEGS RVIDPSKGHS YSKLGSSCSS  60
ICSFKDVVHG NTRVVHRSDN SSPESSTLGQ ETGLLSRKPA PHHSTSGSAG KSNCRSGSGS  120
GTYTSRGMQF RKLSGCYECH MIIDPSRQPM PRSTICVCSQ CGEVFPKMES LELHQAVRHA  180
VSELGPEDSG RNIVEIIFKS SWLKRDTPMC KIERILKVHN TQRTIQRFEE CRDAVKSRAV  240
SSTKKNPRCA ADGNELLRFH CTALTCALGE RGSSALCSAG PSCGVCTIIR HGFQGGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0176630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368224.11e-156uncharacterized protein LOC113874200
TrEMBLA0A371ID841e-152A0A371ID84_MUCPR; Uncharacterized protein
STRINGAES597231e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-120C2H2-like zinc finger protein