PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0155490.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SRS

Protein Properties

Length: 330aa MW: 35313.4 Da PI: 7.472

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0155490.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.5	2.1e-65	125	267	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 +sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++ s+r+r+ ++ +a s + ++ + Lj5g3v0155490.1 125 ASGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQNQQH-------SRRHRDG-NQDVAAGSLAPVPIT- 209 5789**************************************************9966553.......3444443.222233333333433. PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le ++P+e++s+avfrcv+vs++d ++e ++Yqtav+igGhvfkGiLydqG ++ Lj5g3v0155490.1 210 -STGLELGQFPPELNSPAVFRCVKVSAMDAQDERYGYQTAVNIGGHVFKGILYDQGQDN 267 .45689999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.8E-62	128	266	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	130	172	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.9E-24	217	264	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAGFFSLGSG SGSGRGSASA QQNKDHEEEQ QERDHTNNTL LFRNEEIYNK GFEIWPQSSY 60 HNQQNLTSYY SFGVGPSRRN NNNNNPSSSN VNNDDVSVSF SDESTRFGFT VVRPGGGGGG 120 FGGGASGGMN CQDCGNQAKK DCPHLRCRTC CKSRGFQCQT HVKSTWVPAA KRRERQQQLA 180 TLQNQQHSRR HRDGNQDVAA GSLAPVPITS TGLELGQFPP ELNSPAVFRC VKVSAMDAQD 240 ERYGYQTAVN IGGHVFKGIL YDQGQDNAPN YTNAGAGEGS PGGGGASGEG APPQNLLTAT 300 TSGNPFDSSL YPAPLNAFMA GTQFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0155490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	4e-33	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235804.1	1e-139	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-80	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A371DZR6	1e-127	A0A371DZR6_MUCPR; Protein SHI RELATED SEQUENCE 5 (Fragment)
STRING	GLYMA17G37410.1	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-66	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]