PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0065670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 258aa    MW: 28185.9 Da    PI: 8.0858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0065670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.9e-193681147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G ++W++I+r++  gR++k+c++rw + 
  Lj5g3v0065670.1 36 KGPWSAEEDRILTRLVERHGARNWSLISRYIK-GRSGKSCRLRWCNQ 81
                     79*****************************9.***********985 PP
2Myb_DNA-binding52.31.3e-1690132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ +Ede ++ a++++G++ W++Iar ++ gRt++ +k++w++ 
  Lj5g3v0065670.1  90 PFSVQEDETIIAAHARFGNR-WAAIARLLP-GRTDNAVKNHWNST 132
                      799*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.7343186IPR017930Myb domain
SuperFamilySSF466893.38E-3133129IPR009057Homeodomain-like
SMARTSM007171.7E-163584IPR001005SANT/Myb domain
PfamPF002491.0E-173681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-243789IPR009057Homeodomain-like
CDDcd001671.13E-153880No hitNo description
SMARTSM007174.8E-1587135IPR001005SANT/Myb domain
PROSITE profilePS5129419.9388137IPR017930Myb domain
CDDcd001676.70E-1290133No hitNo description
PfamPF002492.8E-1490132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2290136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEAPNRSSST TTSSSDSCSS DSNPRSNNPN RPERIKGPWS AEEDRILTRL VERHGARNWS  60
LISRYIKGRS GKSCRLRWCN QLSPTVEHRP FSVQEDETII AAHARFGNRW AAIARLLPGR  120
TDNAVKNHWN STLKRRVPGG GGGSHEVGPS SSGSAAARME DDDPLTALTL APPGIGNSSV  180
EEVVADHPHN YQQHHPRQAP XLPATPPPAV AVAGECSGGV LGCDERCDCE GSEGIRVFQY  240
FSQLGFSLIN FSSFYRFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-413213754159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-413213754159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.151410.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0065670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356408.17e-84transcription factor MYB77-like
TrEMBLA0A1S2Y9P92e-79A0A1S2Y9P9_CICAR; transcription factor MYB1-like
STRINGXP_004501595.13e-80(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-57myb domain protein 73