PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v3099330.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 268aa MW: 30068.9 Da PI: 7.166

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v3099330.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	8.3e-08	162	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Lj4g3v3099330.1 162 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 209 8*************************8....355888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.24E-9	156	213	No hit	No description
SuperFamily	SSF47459	6.02E-16	156	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-16	158	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.691	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAEFTADWQS LRPSSFPFLD IDNMELLNHL KGVNSHTLDN SILNMQNLMQ FSSGSFFCSS 60 EPEFQGNLEE NMPGLVHHFN QNAAPVSPPI SSVENEGRKR KATNMSGPSS ANSTPSVSES 120 ESKIKNCSGR GKRVKKNMME EEDKKSTQVV HVRARRGQAT DSHSLAERVR RGKINEKLKC 180 LQNIVPGCYK TMGMAIMLDE IINYVQSLQH QVEFLSMKLT AASTFYDFNS EINSLEAMQR 240 ARVSEAKELA KYVTEGYEGV SCFQPTWP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v3099330.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136059	0.0	BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007154151.1	1e-138	hypothetical protein PHAVU_003G094700g
Refseq	XP_017439191.1	1e-138	PREDICTED: transcription factor BEE 1-like
Refseq	XP_027925157.1	1e-138	transcription factor BEE 1-like
Swissprot	Q8GWK7	1e-57	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	C0JP27	0.0	C0JP27_LOTJA; Putative basic helix-loop-helix protein BHLH5
STRING	XP_007154151.1	1e-138	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	4e-60	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]