PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v3099260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 45910.1 Da PI: 5.1131 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.7e-07 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + ++++fC ++ +lC+ C + H+ H++v Lj4g3v3099260.1 16 ARACDSCLRRRARWFCGADDAFLCHGCDTLVHSAnqlasrHERV 59 578*****************************657788888876 PP | |||||||
2 | CCT | 66.9 | 5.4e-23 | 351 | 393 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Lj4g3v3099260.1 351 REARVLRYREKRRTRLFAKKIRYEVRKLNAEKRPRLKGRFVKR 393 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.296 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.0E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-6 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.44E-8 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 1.4E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.023 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MTSDMRGAGA LGAKTARACD SCLRRRARWF CGADDAFLCH GCDTLVHSAN QLASRHERVR 60 LQSASSKVTT TQAWHSGFTR KARTPRQKNH NLALQQRFKE KVLFNNTSSV VLPLVPELGG 120 EEQEQLVDDD ESEEQLLFRV PVFEPFDGEP CIKELKYNTQ NDAADDEEAC NLESFCDFDV 180 DLAEFAASVQ SLLGNGVHED LGEVFNYTKE DEIAAYVIGD AATSEKAKVK DEELDTADTN 240 RGCHLESVLD ITSNEAFEWN IDSMLQEEKE AVVASNSGER EEGTKRDMFL RLNYEEVITA 300 WASQGSPWTT GNPPKFNSDE DFLPNCMGLS GADEEYRNLR GHIVGRGDEG REARVLRYRE 360 KRRTRLFAKK IRYEVRKLNA EKRPRLKGRF VKRTCLVGAT SSFPAYH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 377 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v3099260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630849.1 | 1e-171 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | G7L9P2 | 1e-170 | G7L9P2_MEDTR; Putative transcription factor C2C2-CO-like family | ||||
STRING | AET05325 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 9e-89 | B-box type zinc finger protein with CCT domain |