PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3099260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 407aa    MW: 45910.1 Da    PI: 5.1131
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3099260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.7e-071659340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Lj4g3v3099260.1 16 ARACDSCLRRRARWFCGADDAFLCHGCDTLVHSAnqlasrHERV 59
                     578*****************************657788888876 PP

2CCT66.95.4e-23351393143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      Rea++lRY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Lj4g3v3099260.1 351 REARVLRYREKRRTRLFAKKIRYEVRKLNAEKRPRLKGRFVKR 393
                      9****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2961461IPR000315B-box-type zinc finger
SMARTSM003364.0E-91461IPR000315B-box-type zinc finger
PfamPF006432.8E-61659IPR000315B-box-type zinc finger
CDDcd000212.44E-81761No hitNo description
PfamPF062031.4E-17351393IPR010402CCT domain
PROSITE profilePS5101716.023351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTSDMRGAGA LGAKTARACD SCLRRRARWF CGADDAFLCH GCDTLVHSAN QLASRHERVR  60
LQSASSKVTT TQAWHSGFTR KARTPRQKNH NLALQQRFKE KVLFNNTSSV VLPLVPELGG  120
EEQEQLVDDD ESEEQLLFRV PVFEPFDGEP CIKELKYNTQ NDAADDEEAC NLESFCDFDV  180
DLAEFAASVQ SLLGNGVHED LGEVFNYTKE DEIAAYVIGD AATSEKAKVK DEELDTADTN  240
RGCHLESVLD ITSNEAFEWN IDSMLQEEKE AVVASNSGER EEGTKRDMFL RLNYEEVITA  300
WASQGSPWTT GNPPKFNSDE DFLPNCMGLS GADEEYRNLR GHIVGRGDEG REARVLRYRE  360
KRRTRLFAKK IRYEVRKLNA EKRPRLKGRF VKRTCLVGAT SSFPAYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361377RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3099260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630849.11e-171zinc finger protein CONSTANS-LIKE 16
TrEMBLG7L9P21e-170G7L9P2_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAET053251e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.19e-89B-box type zinc finger protein with CCT domain