PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v3061530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CPP | ||||||||
Protein Properties | Length: 551aa MW: 59303.9 Da PI: 7.7362 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.7 | 2.7e-14 | 82 | 120 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C N+ + Lj4g3v3061530.1 82 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCYNNVD 120 89**************************.********986 PP | |||||||
2 | TCR | 51 | 2.8e-16 | 166 | 205 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Lj4g3v3061530.1 166 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 205 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.0E-16 | 81 | 121 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.861 | 82 | 206 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.8E-11 | 83 | 118 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 166 | 207 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.0E-12 | 169 | 204 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MGEGEGGGDC PPNNASLEGV LLPSKKLARQ LDFTAFGGVP PEPPQPPPTL PLLPSVRPVK 60 PESPKSKSRT NFEIKDTTTP KKQKQCNCKH SKCLKLYCEC FASGIYCDGC NCVNCYNNVD 120 NEAARREAVE ATLERNPNAF RPKIASSPHG TRDIREEAGE ILILGKHNKG CHCKKSGCLK 180 KYCECFQANI LCSENCKCMD CKNFEGSEER QALFIGDQNN NIAHIQQAAA ANAAITGAIG 240 SSGFSSPPVS RKRKSSELFF GPTMKDPSVG RLGQQANHVR AHAPSSSMSP IPGARVGPTS 300 GPSKFMYRSL LADIIQPQHL KELCSVLVLV SGQAAKTLTD QKNLMDKHAE DQTETSLASS 360 TQEQLPSQKD VDVEKAMADD RSSANQADKI SPGNSSSEEA DVPKGRPMSP GTLALMCDEQ 420 DPMFMTASSP IGTMARQCNP SSQSPYGQGM TENHAEQERI VSTKFRDFLN RVITMGEINE 480 TKCSSLARSE LESQKDPIIN GIANASTERT QQQGATSNGV AKAIGNSITS TSLVPRSPVP 540 ENGESKPKVE K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-30 | 83 | 214 | 11 | 131 | Protein lin-54 homolog |
5fd3_B | 7e-30 | 83 | 214 | 11 | 131 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 254 | SRKRKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v3061530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-101 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028233843.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A445KT98 | 0.0 | A0A445KT98_GLYSO; Protein tesmin/TSO1-like CXC 5 isoform A | ||||
STRING | GLYMA07G09380.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-153 | Tesmin/TSO1-like CXC domain-containing protein |