PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3031680.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 444aa    MW: 50008.7 Da    PI: 7.0167
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3031680.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.2e-33471891128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........t 78 
                      lp+G++F+Ptd+el+ e+L++k ++ k    ++++   i+   +i++++P+++p  v+ +  + +fF++ +k+y+tg+rk+r+           
  Lj4g3v3031680.2  47 LPAGVKFDPTDQELM-EHLEAKGKDMKshplIDEFILtIEGEdGICYTHPEKIP-GVSRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqqG 138
                      799************.99**998887766665554555887757**********.555666799******************857666666443 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Lj4g3v3031680.2 139 GETRWHKTGKTRPVIV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                      3778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-3743208IPR003441NAC domain
PROSITE profilePS5100531.82247208IPR003441NAC domain
PfamPF023656.5E-1548189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNNMSNLSSF SSSGLIDSRL EEHQLCRSKQ CPSCGHKFEG KPDWLGLPAG VKFDPTDQEL  60
MEHLEAKGKD MKSHPLIDEF ILTIEGEDGI CYTHPEKIPG VSRDGLSRHF FHRPSKAYTT  120
GTRKRRKIQT ECDHLQQGGE TRWHKTGKTR PVIVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QNEEEKEGEL VVSKIFYQTQ PRQCNWSEKS AATTTTTTNG EGSGDPNYSG  240
SGSCSSKEVV TQRDEMSAAV VGVTPMTSFT TALDIQHLKS DHLSFFPFRK SLHEVGIGEA  300
SRTSREVQAS GSCEEEVHEQ RHVAHHDHHQ QQQQQQIATT SFHMISRPSH PISTIISPPP  360
LNHTSINILD DNSYQVSTTT MMLQNDNFQQ HDDKLGGRSA SGLEELIMGC TSTLTKQSQE  420
SSMANPQEAE WLKYSSYWPH PDHH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3031680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467390.0BT146739.1 Lotus japonicus clone JCVI-FLLj-12P21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215774.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_029127290.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_029127291.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-133NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A371GHV10.0A0A371GHV1_MUCPR; NAC domain-containing protein 73 (Fragment)
STRINGXP_007160268.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-130NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]