PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3002710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 364aa    MW: 41787.1 Da    PI: 5.4527
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3002710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29136196259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp++++itY+g+H+++
  Lj4g3v3002710.1 136 DDGYNWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDEDPTIFDITYRGKHTCS 196
                      8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-29126197IPR003657WRKY domain
PROSITE profilePS5081122.435130193IPR003657WRKY domain
SuperFamilySSF1182906.02E-26134197IPR003657WRKY domain
SMARTSM007743.2E-41135197IPR003657WRKY domain
PfamPF031069.1E-27136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQKMENEWSW EQNTLINELI QGMEVARRLK EDLKTPYSVN TRDLQVQRIL SSYEKALQIL  60
RWNESTSKLQ TTNGATTLLS ESPPLSANGS PMREEIDWAI QDHQEAKRDS KKRKTMPKWI  120
DQIRVVSENG LEGPHDDGYN WRKYGQKDIL GAKYPRSYYR CTFRNTQNCW ATKQVQRSDE  180
DPTIFDITYR GKHTCSQGNE AVQPHNSPEK QQKLNSHNND SHHAKQTNES LTKLRNTLTV  240
RTDHLGNQEM SCPFTFPSTS FGCMAQENYS LIPSALENDS FLSSLYQTQL LSTTGAESNY  300
FSSPTFQLNE FDGVYNQPRS ESDITEIIST NTSATNSPIL DFNFSLDQVE LDPNFPFNTP  360
GFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-171371931874Disease resistance protein RRS1
5w3x_D2e-171371931874Disease resistance protein RRS1
6ir8_A2e-17136195968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3002710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223510.10.0probable WRKY transcription factor 41
TrEMBLA0A151SV620.0A0A151SV62_CAJCA; Putative WRKY transcription factor 41
STRINGGLYMA05G36970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-69WRKY family protein