PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2990170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 35727.7 Da PI: 5.2698 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.4e-31 | 146 | 204 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+ +tY+ eHnh+ Lj4g3v2990170.1 146 ADEWAWRKYGQKPIKGSPYPRSYYRCSSTkGCLARKQVERSHLDPAVFLVTYTAEHNHS 204 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-30 | 132 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.284 | 140 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 145 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-37 | 145 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 147 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MMNELACLMD WDLEAIVRGC NNGEASATTM MDHQDHNFSH HFFSEQDELL GFNFPEFSEA 60 TCVLDELEEL YKPFYPVLHP LNSLQSTIVT SSLPIPKEVK ELKASSSEKA ASQDLQVPSE 120 SKYKRGKKNQ NKSVVKKQVK GGDGLADEWA WRKYGQKPIK GSPYPRSYYR CSSTKGCLAR 180 KQVERSHLDP AVFLVTYTAE HNHSQPARKN SLAGTTRNKN ISQNTCSSNS SSSAVTHSPI 240 RTPNLVVVAS SNIKDEVGTR VQQSDKGLEK EEDFLEWLDG DAGGATFGDG WIPSSELEDL 300 IGFKYQELVD GCDFTDGSDD R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-19 | 143 | 207 | 15 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-19 | 143 | 207 | 15 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.13342 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2990170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145851 | 0.0 | BT145851.1 Lotus japonicus clone JCVI-FLLj-20B4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027918161.1 | 1e-119 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 3e-51 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A4D6L978 | 1e-118 | A0A4D6L978_VIGUN; WRKY transcription factor 29 | ||||
STRING | XP_007160109.1 | 1e-117 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 4e-33 | WRKY family protein |