PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2976880.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TALE

Protein Properties

Length: 348aa MW: 40045.3 Da PI: 9.248

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2976880.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.5	1.9e-07	315	348	19	50
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqN 50 Fe ++yps ++ LA+++gL+ +qV++WF N Lj4g3v2976880.1 315 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFIN 348 664459**************************88 PP
2	BELL	104	1.1e-33	177	247	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kL s+leeV++r+++y++q+++v+ssFeavag g+a++Y +lAlk++S+hFrc k + eqi Lj4g3v2976880.1 177 FVELQKRKTKLFSMLEEVERRHRHYCNQMKAVVSSFEAVAGNGAATVYSALALKQMSKHFRCFKGGVLEQI 247 679******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.1E-45	118	245	IPR006563	POX domain
Pfam	PF07526	7.1E-40	123	242	IPR006563	POX domain
PROSITE profile	PS50071	10.835	293	348	IPR001356	Homeobox domain
CDD	cd00086	3.68E-8	296	348	No hit	No description
SuperFamily	SSF46689	1.8E-12	297	348	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-20	299	348	IPR009057	Homeodomain-like
Pfam	PF05920	6.0E-15	313	348	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGENKSRDMV SSSTGMDMIG FSKNLHLHHQ QQQQEENHLI QDSSSPWQNN SRFLVDDSSL 60 RCVFPCEGNE RPSQGLSLSL SSTNPSSIGL QPFELRHTNQ HHHHHQQQML QDANIYHQHG 120 DFVLKHSKFL VPAQDLLNEL CSLGTKKNDI PKSEKSEKNK EWEEGSSKKH CLGSLEFVEL 180 QKRKTKLFSM LEEVERRHRH YCNQMKAVVS SFEAVAGNGA ATVYSALALK QMSKHFRCFK 240 GGVLEQIHAT RKLLGEKDPI SPGTTKGETP RLRIIEQTLR QQRAFQQMNM METHPWRPQR 300 GLPERSVSVL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS QVSNWFIN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGENKSRDMV SSSTGMDMIG FSKNLHLHHQ QQQQEENHLI QDSSSPWQNN SRFLVDDSSL  60
RCVFPCEGNE RPSQGLSLSL SSTNPSSIGL QPFELRHTNQ HHHHHQQQML QDANIYHQHG  120
DFVLKHSKFL VPAQDLLNEL CSLGTKKNDI PKSEKSEKNK EWEEGSSKKH CLGSLEFVEL  180
QKRKTKLFSM LEEVERRHRH YCNQMKAVVS SFEAVAGNGA ATVYSALALK QMSKHFRCFK  240
GGVLEQIHAT RKLLGEKDPI SPGTTKGETP RLRIIEQTLR QQRAFQQMNM METHPWRPQR  300
GLPERSVSVL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS QVSNWFIN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2976880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027339756.1	1e-167	homeobox protein BEL1 homolog
Refseq	XP_027339757.1	1e-167	homeobox protein BEL1 homolog
Refseq	XP_027339758.1	1e-167	homeobox protein BEL1 homolog
Swissprot	Q38897	4e-91	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A1S3UW10	1e-162	A0A1S3UW10_VIGRR; homeobox protein BEL1 homolog
STRING	XP_007160096.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4650	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	2e-83	BEL1-like homeodomain 2

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]