PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2916450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 391aa MW: 42828.8 Da PI: 8.3838 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.8 | 3.7e-39 | 105 | 181 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrr kvCe hsk ++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Lj4g3v2916450.2 105 CLVDGCQSDLSKCRDYHRRQKVCELHSKRAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 181 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-31 | 98 | 166 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.564 | 102 | 179 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-36 | 103 | 184 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.2E-29 | 105 | 178 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MEWNLKASSW DLSEVDQAAT IPNIETVDHG SINRFGVYRT KGEFSVDLKL GQLGNSSNEL 60 VAAKSKLDVA AGGVSKMTTT TPSSSSSGSS KRARAINNGT QRVSCLVDGC QSDLSKCRDY 120 HRRQKVCELH SKRAQVTIGG HKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ 180 PEPLTRSCDF LSNYQGTQLL PFSSPHVYPP TAVVNPAWAG VVTPAADVRP HSHNQHQQQI 240 HMVDKQDLFL GSSPSSYKEG KQVAFMPGDQ NPHLPAASIG HKFGRPSPFA ESDGLRCKNM 300 FCDSLTSSVQ ESSCALSLLS SPQAHNTAGN GFNQMVNPHS SLMQPLGLSL HDNSMGPVYS 360 GCDDHCSSMY NVGSSGSQGN EAPSMFPFQW E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 105 | 178 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 178 | KRSCRKRLDGHNRRRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4092 | 0.0 | floral bud| pod |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2916450.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019457641.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A isoform X2 | ||||
TrEMBL | A0A4P1RTK9 | 0.0 | A0A4P1RTK9_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA05G38180.8 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-74 | SBP family protein |