PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2882160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BBR-BPC
Protein Properties Length: 317aa    MW: 35702.5 Da    PI: 9.8829
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2882160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind331.91.7e-10143173301
        GAGA_bind   3 ddgsre.rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalver 77 
                      d  +++ r+k  yy+              ++ ++l   ++++l s++aer+a++   e ++a+sek++a+a+rd a+ qrd+ala+r++al++r
  Lj4g3v2882160.1   4 DRQHENgRHKMeYYRgarspwdmdhqhqvKEpNALV--MNKKLRSIMAERQAALleLELEAAISEKNEALAARDLALRQRDEALAQRDNALLQR 95 
                      444555899888888999999999876653335666..99*************977677889******************************** PP

        GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkk 168
                      dn+l+al+ ++ +   + p++ ++ +g+k i+++ + + ++++++++ ++++ + +a p++  ++e  ++++ k+++++k+  +k +k   k+k
  Lj4g3v2882160.1  96 DNALAALQNRNSA--VNFPFSGGSQRGSKWIHHSPN-HLSDITETSYITKDMIIRDASPVTIVTPEDVRSHQAKRTKESKVINSKSSKppcKVK 186
                      ********97765..778999999********9998.6699*************9999999888888888887777777766655555435777 PP

        GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
                      k +e+ +kk ++e+  ++ ++e++s+d++ln +++De+ +PvPvC+CtG+ rqCYkWGnGGWqS+CCttt+SvyPLP+ +++r+aRi+grKmS+
  Lj4g3v2882160.1 187 KLGEDLNKKASSEG--TKFRSEWDSQDVGLNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSG 278
                      77777766666666..78**************************************************************************** PP

        GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      ++f++lL+kLa+eG+d+s p+DLk++WA+HGtn+++ti+
  Lj4g3v2882160.1 279 SVFTRLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK 317
                      **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.9E-1341317IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-949317IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGDDRQHENG RHKMEYYRGA RSPWDMDHQH QVKEPNALVM NKKLRSIMAE RQAALLELEL  60
EAAISEKNEA LAARDLALRQ RDEALAQRDN ALLQRDNALA ALQNRNSAVN FPFSGGSQRG  120
SKWIHHSPNH LSDITETSYI TKDMIIRDAS PVTIVTPEDV RSHQAKRTKE SKVINSKSSK  180
PPCKVKKLGE DLNKKASSEG TKFRSEWDSQ DVGLNLIAFD ETIMPVPVCT CTGIARQCYK  240
WGNGGWQSSC CTTTLSVYPL PQLPNKRHAR IGGRKMSGSV FTRLLSKLAS EGHDISIPLD  300
LKNYWARHGT NRYITIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.64130.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2882160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462750.0BT146275.1 Lotus japonicus clone JCVI-FLLj-11D6 unknown mRNA.
GenBankFJ9823190.0FJ982319.1 Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525427.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_003525429.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_003532442.10.0protein BASIC PENTACYSTEINE4
RefseqXP_003532443.10.0protein BASIC PENTACYSTEINE4
RefseqXP_006580620.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233459.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233460.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233461.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028245019.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028245020.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-119BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLH1ZNA30.0H1ZNA3_LOTJA; GAGA-binding transcriptional activator
STRINGGLYMA05G38430.50.0(Glycine max)
STRINGGLYMA08G01240.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-102basic pentacysteine 4