PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2859520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 30862.8 Da PI: 9.9417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEd+ l +++k G g+W++ ++ g++R++k+c++rw +yl Lj4g3v2859520.1 14 KGTWSREEDLCLSNYIKANGEGNWRALPKAAGLNRCGKSCRLRWINYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd+l+++++ + G++ W++Ia++++ gRt++++k++w++ Lj4g3v2859520.1 68 GNFTAEEDDLIIQLHSEVGNK-WASIAAYLP-GRTDNEIKNHWNT 110 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.031 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.72E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.484 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-13 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGRSPCCDKE HINKGTWSRE EDLCLSNYIK ANGEGNWRAL PKAAGLNRCG KSCRLRWINY 60 LKPGVKHGNF TAEEDDLIIQ LHSEVGNKWA SIAAYLPGRT DNEIKNHWNT RIKRQLYPRG 120 TNPATHERIP GLGQPPSLST ASVAIVTAAT SAPPAPVVGL TSKKVIISAN NHSSSSNSIV 180 TSGGSISNPQ KNKDKKKIED QFQMFDVFSN SKVVGKAADS GSNRSSAVSA YQEAYNPEIN 240 LELSLAPPMN PPPPQNQNVM PPPQQVLGFQ RGAAPGGFMR FYGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers (PubMed:24319076, PubMed:25053018). Expressed in pollen grains and mature seeds (PubMed:25053018). Expressed in roots and vasculature of leaves (PubMed:24319076). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2859520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025012074.1 | 4e-72 | myb-related protein 308-like | ||||
Swissprot | Q42379 | 4e-65 | MYB7_ARATH; Transcription factor MYB7 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-65 | myb domain protein 7 |