PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2825520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 217aa    MW: 24878.5 Da    PI: 6.3045
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2825520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.76e-5736131297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGf+dyveplk+yl kyre+eg
  Lj4g3v2825520.1  36 KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFDDYVEPLKTYLVKYREIEG 129
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      ek
  Lj4g3v2825520.1 130 EK 131
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-5430158IPR009072Histone-fold
SuperFamilySSF471133.11E-4138155IPR009072Histone-fold
PfamPF008089.9E-2841105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-196987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-1988106No hitNo description
PRINTSPR006151.2E-19107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDESHNNNT LPNNGFSSGS PESPCLKPNN NNHHNKEQDR FLPIANVGRI MKKVIPANGK  60
ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD IIWAITTLGF DDYVEPLKTY  120
LVKYREIEGE KVNTPKQQQQ QRSDQQRLLQ HQHSQDENNI NNQPFNCVYT TSTNLMSHHQ  180
PPFVAADQPF PLPFSTNSIQ KQLRPQDQID SVGHWYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-4536126797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2825520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919153.11e-106nuclear transcription factor Y subunit B-7
SwissprotQ9SIT93e-74NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A0B2RPC71e-104A0A0B2RPC7_GLYSO; Nuclear transcription factor Y subunit B-7
TrEMBLI1K5111e-104I1K511_SOYBN; Uncharacterized protein
STRINGGLYMA05G32680.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.19e-74nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]