PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2799410.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 225aa    MW: 24401 Da    PI: 6.5336
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2799410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5427122297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdrflPianvsrimkk+ Panakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk yl+ yre+eg
  Lj4g3v2799410.1  27 KEQDRFLPIANVSRIMKKAPPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNSYRETEG 120
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      ek
  Lj4g3v2799410.1 121 EK 122
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-5223133IPR009072Histone-fold
SuperFamilySSF471134.19E-3929126IPR009072Histone-fold
PfamPF008081.2E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.8E-186078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.8E-187997No hitNo description
PRINTSPR006159.8E-1898116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTGKRNNQTS PVGSPTSGNI SDGSNSKEQD RFLPIANVSR IMKKAPPANA KISKEAKETV  60
QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKG YLNSYRETEG  120
EKSNNCSVAK PEDHDDAGVV EINNKMLHSS VDFATSFNGG GGFYSSSSVG SQQLAPKTTS  180
FQEIGGNNIR GYSEISSMNR AIAQSVASGD QDASGNRMMP YRVQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4627117292Transcription factor HapC (Eurofung)
4g92_B5e-4627117292Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2799410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364452.11e-103nuclear transcription factor Y subunit B-like
TrEMBLA0A445KQT03e-98A0A445KQT0_GLYSO; Nuclear transcription factor Y subunit B-3
TrEMBLV7CQX43e-98V7CQX4_PHAVU; Uncharacterized protein
STRINGXP_007159754.15e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-63nuclear factor Y, subunit B3