PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2742990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 663aa    MW: 73372.2 Da    PI: 8.3137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2742990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07929526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +Cr+fa+ G C +G++C+F H 
  Lj4g3v2742990.1  9 PCRDFAA-GKCIRGSQCHFLHH 29
                     8******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0032430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5830IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-5929IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953931IPR000571Zinc finger, CCCH-type
SMARTSM003560.46490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1456492IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-4128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037128155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5131153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MRPEGLAQPC RDFAAGKCIR GSQCHFLHHD NQNYENGRES RQRQDRAPGY SAPHESGDIS  60
LTSGRSDEAC INFAKGRCRF GASCRHVHHG NSDEFGKVSV GESSRENDID NRRLENSFKQ  120
GGRHDLNRSA DTPCRFFAFG NCRNGNHCRF SHDRQSGRSP DRRLRDDSSR SNQGGDQVSN  180
RPKLSDSASS NGRLRDDRWR SDGSIADVSK VWDGPKSNDL SAVSNSRKLV EDNQDGIMGA  240
PGHGFSAWPM SDGWDHSLDK NMVHDKTSFS SDKKEPNLWA AGNATANIHT SQPVGTGIWP  300
GDEQMSPDWN VGTSSHFKKN HEQNNLQVAP GHGYNQNAQN VNALHSSSSH AVGQSQPPFS  360
VVPPRARIVE GMQNQELFTE KKYIGEPNIM DASLLQVGSR NPSTQNMVSK EQLVQLTCLT  420
ASLAQILGTG SQLPQLCSNL NSHDAKDTPS GKPVSIAFSK PDPSIGFQKH NNPSGFSPMI  480
SPSKIIPKES VEMPSLLSNS EQFDDSCKTA FSEEQLVKSK HLIQLQKDEN IGDNKESNEM  540
VAEEKRSSRG ENKITKESGP LESMDQSGGP DEIKKTKDVK GMRAFKGSLV EFIKELLKPT  600
WKEGQITKDD YKEIVKKVTD KVSVTVQRAH VPQTQEKIDR YLSVSKPKLN KLIQAYVEKV  660
QKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.86460.0flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2742990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105040.0AP010504.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT20M06, TM1747, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341394.10.0zinc finger CCCH domain-containing protein 38-like isoform X7
TrEMBLA0A371E8B70.0A0A371E8B7_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRINGXP_004503947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-14C3H family protein