PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2690710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 376aa    MW: 42063.5 Da    PI: 8.3971
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2690710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.92.2e-082462921763
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Lj4g3v2690710.1 246 AQRSRVRKLQYIAELERNVQVLQAEGSEISAELEFLNQQNLILSMEN 292
                      89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-4235294IPR004827Basic-leucine zipper domain
CDDcd147031.73E-16237285No hitNo description
SuperFamilySSF579593.75E-6246288No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-5246289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MANSKGSSSV RNLMYPGKHA LLPPKSPFPS VSQAYADYLS IPGVGSKAVN KSREGSTHHQ  60
RTSSESHVIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDTANMSN ITYADQDEYK  120
YKNLISTPSW SSQDFDRNKD AYHIPMYAEM NLAKQKNRSW DSFSNGVTSL GGVPSGKDHV  180
AFQSSGSLTP CTPHEADGLP PTVNEKSESI KSGLQDARSS FERKDGSHAK SSASETDTKR  240
AKQQFAQRSR VRKLQYIAEL ERNVQVLQAE GSEISAELEF LNQQNLILSM ENKALKQRLE  300
SLAQEQLIKY LEQEVLEREI GRLRGLYQQQ LQPQQQPSSS HRRTNSRDLE SQFANLALKH  360
KDTNSGHDPA TGALRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.54290.0cell culture| floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2690710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1355830.0BT135583.1 Lotus japonicus clone JCVI-FLLj-21M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346207.10.0uncharacterized protein At4g06598-like
SwissprotQ8W3M72e-68Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A1S2YGU30.0A0A1S2YGU3_CICAR; uncharacterized protein At4g06598-like
STRINGXP_004504198.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51232637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-110bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]