PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2665270.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 619aa MW: 68042.8 Da PI: 6.8171

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2665270.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.2e-19	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps ++r +L +++ +++ +q+kvWFqNrR +ek+ Lj4g3v2665270.1 19 KYVRYTPEQVEALERLYAECPKPSSSRRHQLIREChilaNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP
2	bZIP_1	19.9	1.6e-06	71	113	18	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+kl Lj4g3v2665270.1 71 RRCREKQRKESSRLQTVNRKLTAMNKLLMEENDRLQKQVSKLV 113 9***************************************985 PP
3	START	156.8	1.7e-49	168	375	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aeea++e+++ka+ ++ +Wv + +++g++++ +++ s++++g a+ra+g+v ++a v+e+l+d++ W ++++ +l + ++ g+++l Lj4g3v2665270.1 168 IAEEALAEFLSKATGTAVNWVPMIGMKPGPDSIGIVAVSRNCRGVAARACGLVSLEPA-KVAEILKDRPSWYRDCRCLNVLSIVPTAngGIIEL 260 689*****************************************************.8888888888***********99999* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s p+ ss+vRae++pSg+li+++++g+s +++v+hvdl+ r+++++lr+ Lj4g3v2665270.1 261 LYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSIGGPTgppASSFVRAEMFPSGYLIRSCEGGGSIIHIVDHVDLDIRSVPEVLRP 354 ************************************8777766779**************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s ++k + a+l++ + Lj4g3v2665270.1 355 LYESPKNLAQKSTIAALRHVR 375 **************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.58	14	78	IPR001356	Homeobox domain
SMART	SM00389	2.8E-16	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	18	80	IPR009057	Homeodomain-like
CDD	cd00086	2.43E-16	19	79	No hit	No description
Pfam	PF00046	1.8E-16	20	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.4E-19	21	77	IPR009057	Homeodomain-like
CDD	cd14686	2.45E-6	71	110	No hit	No description
PROSITE profile	PS50848	24.799	158	358	IPR002913	START domain
CDD	cd08875	2.63E-71	162	378	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.1E-19	166	357	IPR023393	START-like domain
SMART	SM00234	5.8E-45	167	377	IPR002913	START domain
SuperFamily	SSF55961	3.3E-34	168	379	No hit	No description
Pfam	PF01852	6.6E-47	168	376	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MPLSVLGDSS SSKDMDSGKY VRYTPEQVEA LERLYAECPK PSSSRRHQLI RECHILANIE 60 PKQIKVWFQN RRCREKQRKE SSRLQTVNRK LTAMNKLLME ENDRLQKQVS KLVYDNGYMK 120 QQVQTASATT TDNSCESVVM SGQQHQQLFP KTKHPQWDAN NPAGLLAIAE EALAEFLSKA 180 TGTAVNWVPM IGMKPGPDSI GIVAVSRNCR GVAARACGLV SLEPAKVAEI LKDRPSWYRD 240 CRCLNVLSIV PTANGGIIEL LYMQTYAPTT LAAARDFWTL RYTTSLEDGS LVICERSLTS 300 SIGGPTGPPA SSFVRAEMFP SGYLIRSCEG GGSIIHIVDH VDLDIRSVPE VLRPLYESPK 360 NLAQKSTIAA LRHVRQIAQE SSGEVHYGGG RQPAVLRTFS QRLCKGFNDA VNGFADDGWS 420 LMGNDGVEDV TIAINSSQNK FFGSHYNTSL LPPFGGGVLS AKASMLLQNV PPPLLVRFLR 480 EHRSEWADYG VDAYSAACLK ASPYAVPCAR PISYPSSQVI LPLAPTVEHE EFLEVVRIEG 540 HVFPPEDLPL AGDMYLLQLC GGVDESAIGA CAQLVFAPID ESFADDALLL PSGFRIIALD 600 PKTVQLHSKL FNSFEGIWL

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MPLSVLGDSS SSKDMDSGKY VRYTPEQVEA LERLYAECPK PSSSRRHQLI RECHILANIE  60
PKQIKVWFQN RRCREKQRKE SSRLQTVNRK LTAMNKLLME ENDRLQKQVS KLVYDNGYMK  120
QQVQTASATT TDNSCESVVM SGQQHQQLFP KTKHPQWDAN NPAGLLAIAE EALAEFLSKA  180
TGTAVNWVPM IGMKPGPDSI GIVAVSRNCR GVAARACGLV SLEPAKVAEI LKDRPSWYRD  240
CRCLNVLSIV PTANGGIIEL LYMQTYAPTT LAAARDFWTL RYTTSLEDGS LVICERSLTS  300
SIGGPTGPPA SSFVRAEMFP SGYLIRSCEG GGSIIHIVDH VDLDIRSVPE VLRPLYESPK  360
NLAQKSTIAA LRHVRQIAQE SSGEVHYGGG RQPAVLRTFS QRLCKGFNDA VNGFADDGWS  420
LMGNDGVEDV TIAINSSQNK FFGSHYNTSL LPPFGGGVLS AKASMLLQNV PPPLLVRFLR  480
EHRSEWADYG VDAYSAACLK ASPYAVPCAR PISYPSSQVI LPLAPTVEHE EFLEVVRIEG  540
HVFPPEDLPL AGDMYLLQLC GGVDESAIGA CAQLVFAPID ESFADDALLL PSGFRIIALD  600
PKTVQLHSKL FNSFEGIWL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:17900520, ECO:0000269\|PubMed:9747806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2665270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215009.1	0.0	homeobox-leucine zipper protein ATHB-14
Swissprot	O04292	0.0	ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBL	A0A151UC57	0.0	A0A151UC57_CAJCA; Homeobox-leucine zipper protein HOX32
STRING	XP_007159548.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5176	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30490.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785]