PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2618490.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HSF | ||||||||
Protein Properties | Length: 398aa MW: 45348.5 Da PI: 5.2278 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.7e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d++ ++++sws++++sfvv+++ +fa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +l++ Lj4g3v2618490.2 14 FLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDGFVRGEPHLMK 98 9********************999****************************************9998.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k Lj4g3v2618490.2 99 NIHRRKP 105 ****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.6E-38 | 4 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.31E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-61 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.9E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MDEAQNSSSS LPPFLAKTYE MVDDPSSDRI VSWSATNRSF VVWNPPDFAR ELLPRFFKHN 60 NFSSFIRQLN TYGFRKVDPE QWEFANDGFV RGEPHLMKNI HRRKPVHSHS MQNLQAHAPL 120 GESERKSLND EIEKLKHNKE RLLMELQRHQ HEWQPYEIQL NCLKEQLEKL EQKQQKMVSS 180 VSQVLHKPVI ALNLLPPTET MDRKRRLPGG GYFNDEASIE DAVDTSQMLP RENAEGASVL 240 TLNMERLDQL ESSMLFWETI AHESGETFIH IHTNMDVDES TSCADSLSIS CPQLEVEVRS 300 KSSGIDMNSE PTAAAVLEPV ASKEQPAGKA AATGVNDVFW EQFLTEDPGA SEAQEVQSER 360 KEYNGRKSEG KPTDHGRFWW NARNANNLPE QVGHVSQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 206 | DRKRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.21684 | 0.0 | cell culture| protoplast |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2618490.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004978 | 0.0 | AP004978.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT44L05, TM0162a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580179.1 | 0.0 | heat stress transcription factor A-4c | ||||
Refseq | XP_028232891.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Swissprot | O49403 | 1e-120 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | R9R6C4 | 0.0 | R9R6C4_9FABA; Heat stress transcription factor A-4a-like protein | ||||
STRING | GLYMA05G29470.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-109 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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