PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2618490.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 398aa    MW: 45348.5 Da    PI: 5.2278
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2618490.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.7e-34141052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d++ ++++sws++++sfvv+++ +fa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +l++
  Lj4g3v2618490.2  14 FLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDGFVRGEPHLMK 98 
                      9********************999****************************************9998.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Lj4g3v2618490.2  99 NIHRRKP 105
                      ****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDEAQNSSSS LPPFLAKTYE MVDDPSSDRI VSWSATNRSF VVWNPPDFAR ELLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDGFV RGEPHLMKNI HRRKPVHSHS MQNLQAHAPL  120
GESERKSLND EIEKLKHNKE RLLMELQRHQ HEWQPYEIQL NCLKEQLEKL EQKQQKMVSS  180
VSQVLHKPVI ALNLLPPTET MDRKRRLPGG GYFNDEASIE DAVDTSQMLP RENAEGASVL  240
TLNMERLDQL ESSMLFWETI AHESGETFIH IHTNMDVDES TSCADSLSIS CPQLEVEVRS  300
KSSGIDMNSE PTAAAVLEPV ASKEQPAGKA AATGVNDVFW EQFLTEDPGA SEAQEVQSER  360
KEYNGRKSEG KPTDHGRFWW NARNANNLPE QVGHVSQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23910324129Heat shock factor protein 1
5d5v_B1e-23910324129Heat shock factor protein 1
5d5v_D1e-23910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.216840.0cell culture| protoplast
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2618490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049780.0AP004978.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT44L05, TM0162a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580179.10.0heat stress transcription factor A-4c
RefseqXP_028232891.10.0heat stress transcription factor A-4c-like
SwissprotO494031e-120HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLR9R6C40.0R9R6C4_9FABA; Heat stress transcription factor A-4a-like protein
STRINGGLYMA05G29470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-109heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]