PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2573590.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CAMTA | ||||||||
Protein Properties | Length: 77aa MW: 9363.64 Da PI: 10.5255 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 86.6 | 2.6e-27 | 13 | 77 | 2 | 65 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgkt 65 ++e ++rwlk+ e++ iL+n+ek+++++e++++p+sgsl+L+nr+++r+fr+DG+ w+kk+dg++ Lj4g3v2573590.2 13 YQEaQRRWLKPAEVMCILQNHEKYQFSQEPPQKPSSGSLFLFNRRVLRFFRRDGHAWRKKRDGRA 77 567699*********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 40.8 | 9 | 77 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.0E-9 | 12 | 77 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.2E-21 | 15 | 76 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MTPGHEYDIN DLYQEAQRRW LKPAEVMCIL QNHEKYQFSQ EPPQKPSSGS LFLFNRRVLR 60 FFRRDGHAWR KKRDGRA |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2573590.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144644 | 2e-41 | AC144644.3 Medicago truncatula clone mth2-14l3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504403.1 | 2e-43 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Refseq | XP_004504404.1 | 2e-43 | calmodulin-binding transcription activator 4 isoform X3 | ||||
Refseq | XP_004504405.1 | 2e-43 | calmodulin-binding transcription activator 4 isoform X4 | ||||
Refseq | XP_012572321.1 | 2e-43 | calmodulin-binding transcription activator 4 isoform X2 | ||||
Refseq | XP_012572322.1 | 2e-43 | calmodulin-binding transcription activator 4 isoform X5 | ||||
Swissprot | Q9FYG2 | 1e-28 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A1S2YGC3 | 4e-42 | A0A1S2YGC3_CICAR; calmodulin-binding transcription activator 4 isoform X1 | ||||
TrEMBL | A0A1S2YGD5 | 4e-42 | A0A1S2YGD5_CICAR; calmodulin-binding transcription activator 4 isoform X4 | ||||
TrEMBL | A0A1S2YHB3 | 4e-42 | A0A1S2YHB3_CICAR; calmodulin-binding transcription activator 4 isoform X3 | ||||
TrEMBL | A0A1S3E925 | 4e-42 | A0A1S3E925_CICAR; calmodulin-binding transcription activator 4 isoform X5 | ||||
TrEMBL | A0A1S3EBH0 | 4e-42 | A0A1S3EBH0_CICAR; calmodulin-binding transcription activator 4 isoform X2 | ||||
STRING | XP_004504403.1 | 7e-43 | (Cicer arietinum) | ||||
STRING | AET04958 | 6e-45 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 5e-21 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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