PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2573590.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CAMTA
Protein Properties Length: 77aa    MW: 9363.64 Da    PI: 10.5255
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2573590.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-186.62.6e-271377265
             CG-1  2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgkt 65
                     ++e ++rwlk+ e++ iL+n+ek+++++e++++p+sgsl+L+nr+++r+fr+DG+ w+kk+dg++
  Lj4g3v2573590.2 13 YQEaQRRWLKPAEVMCILQNHEKYQFSQEPPQKPSSGSLFLFNRRVLRFFRRDGHAWRKKRDGRA 77
                     567699*********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143740.8977IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-91277IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-211576IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MTPGHEYDIN DLYQEAQRRW LKPAEVMCIL QNHEKYQFSQ EPPQKPSSGS LFLFNRRVLR  60
FFRRDGHAWR KKRDGRA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2573590.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446442e-41AC144644.3 Medicago truncatula clone mth2-14l3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504403.12e-43calmodulin-binding transcription activator 4 isoform X1
RefseqXP_004504404.12e-43calmodulin-binding transcription activator 4 isoform X3
RefseqXP_004504405.12e-43calmodulin-binding transcription activator 4 isoform X4
RefseqXP_012572321.12e-43calmodulin-binding transcription activator 4 isoform X2
RefseqXP_012572322.12e-43calmodulin-binding transcription activator 4 isoform X5
SwissprotQ9FYG21e-28CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S2YGC34e-42A0A1S2YGC3_CICAR; calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A1S2YGD54e-42A0A1S2YGD5_CICAR; calmodulin-binding transcription activator 4 isoform X4
TrEMBLA0A1S2YHB34e-42A0A1S2YHB3_CICAR; calmodulin-binding transcription activator 4 isoform X3
TrEMBLA0A1S3E9254e-42A0A1S3E925_CICAR; calmodulin-binding transcription activator 4 isoform X5
TrEMBLA0A1S3EBH04e-42A0A1S3EBH0_CICAR; calmodulin-binding transcription activator 4 isoform X2
STRINGXP_004504403.17e-43(Cicer arietinum)
STRINGAET049586e-45(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.15e-21Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]