PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2468440.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 481aa    MW: 52381.8 Da    PI: 7.4281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2468440.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.2e-36682302135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa....... 70 
                       g+kdrhsk+ T++g RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++                  s   a       
  Lj4g3v2468440.2  68 SGGKDRHSKVMTSKGSRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLpetpeqqsherrgqgfddS---Adaevele 158
                      689*************************************************************8777777777777766552...02334444 PP

              TCP  71 ..sec..eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                        + +   +++++++++n+s++ + +++ +s+ s++s+ s l+l++      r kar+rarer ++++ ++++
  Lj4g3v2468440.2 159 gtE-TsfHHQQNQNQNQNQSQNLSLSKSGCSSTSETSKGSGLSLSRsdirVNRVKARERARERASKEKEKEKE 230
                      431.2335666666666666667777777777777777777777775444555*********65555544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3969227IPR005333Transcription factor, TCP
PROSITE profilePS5136930.2370128IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.045207225IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEEDEIHGHA CKLPRLGGNG RNEPNKIGPR RGNEEEDGGG GKNGGSNTNR FSNWNHHSSR  60
IIRVSRASGG KDRHSKVMTS KGSRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKS  120
AADAIAELPS LPETPEQQSH ERRGQGFDDS ADAEVELEGT ETSFHHQQNQ NQNQNQSQNL  180
SLSKSGCSST SETSKGSGLS LSRSDIRVNR VKARERARER ASKEKEKEKE NDSHIAQHHQ  240
HHQQHNNVNP ISQTASFTEL LTGGISSAVP TTTGPVHQNN NQQWCSSSSA APMDYFTSGL  300
LGPPSSTSRT QHHHHQQHSS GFSISNIQLG HSHSLAEAMS VSLPFNGENH SSASDQMHQQ  360
FSFIPDHHLM PATAAVVTSS SASQATGNGY NLDFSISSAG LAGFNRGTLQ SNSPSFLQRF  420
SPLDGSTVPF FLGGAAATAP AMENHHHHHN LQFSPVFDGG SLQLYYGDGC RHSDQKGKAK  480
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2375129155Putative transcription factor PCF6
5zkt_B7e-2375129155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.17530.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2468440.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1393930.0BT139393.1 Lotus japonicus clone JCVI-FLLj-3L3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341024.10.0transcription factor TCP2-like
RefseqXP_027341025.10.0transcription factor TCP2-like
RefseqXP_027341026.10.0transcription factor TCP2-like
RefseqXP_027341027.10.0transcription factor TCP2-like
RefseqXP_027341028.10.0transcription factor TCP2-like
RefseqXP_027341029.10.0transcription factor TCP2-like
RefseqXP_027341030.10.0transcription factor TCP2-like
RefseqXP_027341031.10.0transcription factor TCP2-like
RefseqXP_027341032.10.0transcription factor TCP2-like
RefseqXP_027341033.10.0transcription factor TCP2-like
RefseqXP_027341034.10.0transcription factor TCP2-like
RefseqXP_027341035.10.0transcription factor TCP2-like
RefseqXP_027341036.10.0transcription factor TCP2-like
RefseqXP_027341037.10.0transcription factor TCP2-like
RefseqXP_027341038.10.0transcription factor TCP2-like
TrEMBLA0A4P1R3J41e-152A0A4P1R3J4_LUPAN; Uncharacterized protein
STRINGPOPTR_0004s06440.11e-134(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2