PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2401040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 278aa MW: 31022.8 Da PI: 10.0973 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 318.3 | 2.3e-97 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkl 81 mddd + n+gyyep +lglqlm +a+rd+k+ r+ + l + ++a+++rd m++ rd+++++ ++++ Lj4g3v2401040.1 1 MDDDVLNMPNWGYYEPF--KGGHLGLQLMPGMADRDTKPffpgRDPAM-LVGANGAFHPRDcvvseppmpMNY-VRDNWINQ--------RDRI 82 899988779******98..4579******************9888888.9***********************.9*******........6789 PP GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174 +++++ + ++ vl++t+ + sl ++++ + ++ + +e+l ++++ ++k++++k ++pk+kk +k+k+ Lj4g3v2401040.1 83 FNMQPPNP--------NYAVLPETSGAPSLPV-----IQPHDISrDEKPDRIEELVVKKEGGQSKKRQSK---GALTTPKAKKPRKPKD----- 155 9***9555........4899********9998.....333333312334445555555444433333332...3566777777777777..... PP GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268 +++v+ +r+k +kk ++lv+ng+++D+s+lPvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+ Lj4g3v2401040.1 156 NSNVA--V--QRVKPPKKPMELVINGIDMDISGLPVPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQGAFKKV 245 22333..3..5799******************************************************************************** PP GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LekLaaeGy+++np+DL++hWA+HGtnkfvtir Lj4g3v2401040.1 246 LEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 278 ********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.4E-163 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.9E-107 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDDDVLNMPN WGYYEPFKGG HLGLQLMPGM ADRDTKPFFP GRDPAMLVGA NGAFHPRDCV 60 VSEPPMPMNY VRDNWINQRD RIFNMQPPNP NYAVLPETSG APSLPVIQPH DISRDEKPDR 120 IEELVVKKEG GQSKKRQSKG ALTTPKAKKP RKPKDNSNVA VQRVKPPKKP MELVINGIDM 180 DISGLPVPVC SCTGSPQQCY RWGCGGWQSA CCTTNVSIYP LPMSIKRRGA RIAGRKMSQG 240 AFKKVLEKLA AEGYNFANPI DLRTHWARHG TNKFVTIR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17215 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2401040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010453 | 0.0 | AP010453.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31N09, TM1865, complete sequence. | |||
GenBank | AP010454 | 0.0 | AP010454.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT30P17, TM1908, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158817.1 | 0.0 | hypothetical protein PHAVU_002G184500g | ||||
Swissprot | Q9LDE2 | 1e-110 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | H1ZNA1 | 0.0 | H1ZNA1_LOTJA; GAGA-binding transcriptional activator | ||||
STRING | XP_007158817.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-112 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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