PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2401040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BBR-BPC
Protein Properties Length: 278aa    MW: 31022.8 Da    PI: 10.0973
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2401040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind318.32.3e-9712781301
        GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkl 81 
                      mddd  +  n+gyyep      +lglqlm  +a+rd+k+    r+  + l + ++a+++rd         m++  rd+++++        ++++
  Lj4g3v2401040.1   1 MDDDVLNMPNWGYYEPF--KGGHLGLQLMPGMADRDTKPffpgRDPAM-LVGANGAFHPRDcvvseppmpMNY-VRDNWINQ--------RDRI 82 
                      899988779******98..4579******************9888888.9***********************.9*******........6789 PP

        GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
                      +++++ +         ++ vl++t+ + sl       ++++ +   ++ + +e+l ++++  ++k++++k      ++pk+kk +k+k+     
  Lj4g3v2401040.1  83 FNMQPPNP--------NYAVLPETSGAPSLPV-----IQPHDISrDEKPDRIEELVVKKEGGQSKKRQSK---GALTTPKAKKPRKPKD----- 155
                      9***9555........4899********9998.....333333312334445555555444433333332...3566777777777777..... PP

        GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
                      +++v+     +r+k +kk ++lv+ng+++D+s+lPvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+
  Lj4g3v2401040.1 156 NSNVA--V--QRVKPPKKPMELVINGIDMDISGLPVPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQGAFKKV 245
                      22333..3..5799******************************************************************************** PP

        GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      LekLaaeGy+++np+DL++hWA+HGtnkfvtir
  Lj4g3v2401040.1 246 LEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 278
                      ********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.4E-1631278IPR010409GAGA-binding transcriptional activator
PfamPF062172.9E-1071278IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDDVLNMPN WGYYEPFKGG HLGLQLMPGM ADRDTKPFFP GRDPAMLVGA NGAFHPRDCV  60
VSEPPMPMNY VRDNWINQRD RIFNMQPPNP NYAVLPETSG APSLPVIQPH DISRDEKPDR  120
IEELVVKKEG GQSKKRQSKG ALTTPKAKKP RKPKDNSNVA VQRVKPPKKP MELVINGIDM  180
DISGLPVPVC SCTGSPQQCY RWGCGGWQSA CCTTNVSIYP LPMSIKRRGA RIAGRKMSQG  240
AFKKVLEKLA AEGYNFANPI DLRTHWARHG TNKFVTIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.172150.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2401040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104530.0AP010453.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31N09, TM1865, complete sequence.
GenBankAP0104540.0AP010454.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT30P17, TM1908, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158817.10.0hypothetical protein PHAVU_002G184500g
SwissprotQ9LDE21e-110BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLH1ZNA10.0H1ZNA1_LOTJA; GAGA-binding transcriptional activator
STRINGXP_007158817.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-112basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]