PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2369420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 489aa    MW: 51327.2 Da    PI: 8.3564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2369420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-124772227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG+C yG+rC+F+H++
  Lj4g3v2369420.1 47 DEADCIYYLRTGYCGYGSRCRFNHPR 72
                     6799********************96 PP
2zf-CCCH37.73.3e-1293117327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rtG Ck+G++Ck++H++
  Lj4g3v2369420.1  93 QPVCQYYMRTGSCKFGSSCKYHHPR 117
                      689********************96 PP
3zf-CCCH35.51.6e-11139163327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++ +tG+Ck+G++CkF+H++
  Lj4g3v2369420.1 139 QKECSYYVKTGQCKFGATCKFHHPQ 163
                      689********************97 PP
4zf-CCCH34.33.9e-11310335227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +C+++H+p
  Lj4g3v2369420.1 310 DQPECHYYMKTGECKFGQSCRYHHPP 335
                      689*********************97 PP
5zf-CCCH31.82.4e-10357380326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++C ++ + G+Ck+G+ CkF H+
  Lj4g3v2369420.1 357 APPCTHYTQRGICKFGSACKFDHP 380
                      689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3524573IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-104772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-65172IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-690117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07990118IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-595117IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943136164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6136164IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126308336IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4308335IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6311336IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943354382IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8357380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5358384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4359380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDRYGGSQSQ SDPSPEWPLA AGETALEEPV WQLGLSGGGE SYPLRPDEAD CIYYLRTGYC  60
GYGSRCRFNH PRDRGAVIGA ARTGGEYPER AGQPVCQYYM RTGSCKFGSS CKYHHPRQPS  120
GTTTPVSLNY HGYPLRMGQK ECSYYVKTGQ CKFGATCKFH HPQPAGGQML APSPVPSVSP  180
LPVPVPSPVY QTGQPPSGPS SQQYGVLVAR PPLLPGSFVQ GPYGPMVLSP AMYPLSSWGP  240
YQAPASPVVP SSSPSNVGST QFNVGSTQFY GITHLPSPTS AYGGPYQTTV SSIGPSGSSQ  300
KEHTLPERPD QPECHYYMKT GECKFGQSCR YHHPPDMGAS KANVNLSPVG LPLRPGAPPC  360
THYTQRGICK FGSACKFDHP IGSLSYSPSA SSLADMPVAP YPVGSSIGTL APSSSSSELR  420
PELAPGSSKE PVSSRMSSSM STSTGSVGLT LSTAGPISQS STLQSAPSSS SLATTTSATS  480
SSTVSQSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.259470.0pod| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2369420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1497160.0BT149716.1 Lotus japonicus clone JCVI-FLLj-12C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609623.20.0zinc finger CCCH domain-containing protein 34 isoform X2
RefseqXP_020226956.10.0zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ6NPN31e-148C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A151STD40.0A0A151STD4_CAJCA; Zinc finger CCCH domain-containing protein 32
TrEMBLG7JKA00.0G7JKA0_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGXP_004508292.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-139C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]