PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2365210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 135aa    MW: 15617.5 Da    PI: 6.9355
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2365210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.31.3e-5415110297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdr+lPianv+rimk++lP+nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal+tlGf+dy++p++ yl++yrele 
  Lj4g3v2365210.1  15 KEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYADPMRRYLHRYRELEV 108
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      ++
  Lj4g3v2365210.1 109 DR 110
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-5110122IPR009072Histone-fold
SuperFamilySSF471131.71E-3817118IPR009072Histone-fold
PfamPF008082.7E-272084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-174866No hitNo description
PROSITE patternPS0068505167IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-176785No hitNo description
PRINTSPR006151.1E-1786104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEDHIGSSSS NGGIKEQDRL LPIANVGRIM KQILPQNAKI SKESKETMQE CVSEFISFVT  60
SEASEKCRKE RRKTVNGDDI CWALGTLGFD DYADPMRRYL HRYRELEVDR THQERGNSPE  120
EKDELFKLSQ RGTRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4514105192Transcription factor HapC (Eurofung)
4g92_B6e-4514105192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2365210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338312.16e-77nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A371EYF17e-74A0A371EYF1_MUCPR; Nuclear transcription factor Y subunit B-5 (Fragment)
STRINGXP_004508609.11e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]