PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2313490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 189aa MW: 21622.6 Da PI: 8.5005 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 66.5 | 4.8e-21 | 15 | 72 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++v+Y eC++NhAasl +DGC+Ef++++ +e +t++a+ Ca CgCH nFH +++ Lj4g3v2313490.1 15 QEVVYLECKRNHAASLNRVCYDGCQEFLKASVDEsNTKDAMLCAVCGCHQNFHLQHTM 72 6899************************9988887899***************88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-17 | 17 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-9 | 17 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.509 | 19 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-16 | 19 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.33E-9 | 116 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-15 | 118 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-16 | 121 | 177 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSDAEINFPP PGFEQEVVYL ECKRNHAASL NRVCYDGCQE FLKASVDESN TKDAMLCAVC 60 GCHQNFHLQH TMYTPKAQSQ TRNTPNIGSS LVGPSDPHVE FRVSAENNPE NERIVMLPKP 120 KRKKRTTFTV HLRNRMTEFA NRIGWTPKGT KREEIDNFCL DIGISHTTFL VWLSNHRPRA 180 MKKNTEMAN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2313490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009766 | 0.0 | AP009766.1 Lotus japonicus genomic DNA, clone: LjT40J14, TM1926, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027338063.1 | 3e-50 | zinc-finger homeodomain protein 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 8e-22 | homeobox protein 27 |