PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2290260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25547.6 Da PI: 4.9438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 103 | 151 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+k+++g Lj4g3v2290260.1 103 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAQAYDDAAKRIRG 151 9*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.7E-39 | 102 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 102 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.973 | 102 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 102 | 160 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.70E-34 | 103 | 160 | No hit | No description |
Pfam | PF00847 | 4.7E-14 | 103 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MCGGAIISDF IDEYPNRGRR LTTGDLCYDL DTLSDVFTSS STHQPPSFHF DDVIPIPNNQ 60 GVASSCEEKK RVMIEVEEKG SDEKSGESEE GIKKGKRVRK NLYRGIRQRP WGKWAAEIRD 120 PRKGVRVWLG TFNTAEEAAQ AYDDAAKRIR GDKAKLNFPD KPEPSEPVTM KAQPDEVKSF 180 VGLDPEAQAQ VVSGEWDSLF YPDLWMLDDV VMPNRRHQLI SQAFPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 103 | 159 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.699 | 0.0 | pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2290260.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092256 | 4e-54 | BT092256.1 Soybean clone JCVI-FLGm-10B7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332783.1 | 8e-65 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 6e-40 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A371ECR5 | 1e-69 | A0A371ECR5_MUCPR; Ethylene-responsive transcription factor RAP2-3 (Fragment) | ||||
STRING | GLYMA09G04630.1 | 1e-54 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-32 | ethylene-responsive element binding protein |