PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2282940.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 337aa    MW: 38171.1 Da    PI: 4.777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2282940.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d+++q G g+W++ ++  g+ R++k+c++rw +yl
  Lj4g3v2282940.1 14 KGRWTAEEDKILTDYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.11.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l
  Lj4g3v2282940.1  67 RGNITPQEEEIIVKLHAILGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.486961IPR017930Myb domain
SuperFamilySSF466891.55E-2811108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211568IPR009057Homeodomain-like
CDDcd001673.41E-91661No hitNo description
PROSITE profilePS5129425.6962116IPR017930Myb domain
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2569116IPR009057Homeodomain-like
CDDcd001673.41E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDKILTDYIQ QNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI TPQEEEIIVK LHAILGNRWS VIAGHLPGRT DNEIKNYWNS HLRRKIYCFM  120
KQLNESLPPI DLAAINVAAS SKRRSSGRGA NQQAPKQEDN KKIQEGNNDL QAQSKREPTS  180
QSYNDNNNSV GDHEMQGYNS FNSNNGTIAS CPNMEEIGDL GPYEWLDDEI MRLSYMFESG  240
VLVNPDGNIT SNEDQVGLVG EEIMQGRNNE ESNFSGEWNN TTSCSSVNSV YDYQWPDMLL  300
EGSSVQSHNQ WELCEEDQNM NCLWGSSSNC EMNGFYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}.
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2282940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737346e-66AB573734.1 Lupinus albus LaMYB11 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528624.11e-162transcription factor MYB111
RefseqXP_028238612.11e-162transcription factor MYB111-like
SwissprotQ9FJ071e-74MY111_ARATH; Transcription factor MYB111
TrEMBLA0A445K1001e-161A0A445K100_GLYSO; Transcription factor MYB111
TrEMBLK7L3L11e-161K7L3L1_SOYBN; Uncharacterized protein
STRINGGLYMA07G37142.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-74myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]