PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2249130.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 1023aa MW: 112364 Da PI: 7.6676 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126 | 1.5e-39 | 153 | 229 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+adls+ak+yhrrhkvCe hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrr+k+ Lj4g3v2249130.2 153 VCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRRKT 229 6************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-31 | 150 | 215 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.761 | 151 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-36 | 152 | 231 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.2E-29 | 154 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 6.88E-8 | 804 | 921 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.80E-9 | 805 | 918 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 9.1E-7 | 806 | 923 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence Send to blast |
MEAEFGGKNP FLYGPEMKGV GNGKRSLEWD LNDWKWDGDL FTAQPLNSVP SDCRGGQFFP 60 PAPEFPAKTA NLSSNLSASV NSGEGKRELE KRRRGVTVRG EGEGDEGNDG NGSLNLNLGG 120 QVYPVMVEGE EKIGKKTRVI ETTATATTFN RAVCQVQDCR ADLSSAKDYH RRHKVCEGHS 180 KATMALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNRRRRRKTH PDAEVNGEAL 240 NDERGSSYLL TSLIRILSNM HSNSSDHTRN IDFLSHLLSN LASLAGIING RSLASILEGS 300 QGLVNAGTPR LEHNVPILNS SGLETSRPSG SSIKTDNDFI HQDPPNSAAH CETLPAYGIG 360 QKCIPLGDGG VRNIKPPSGP HPSNLLLSRD SLPSELIAAQ TTAGRNSLNN IDLNNVYDDA 420 QNGVEKKTHP PVASEIGSTY LPSWLRSDSL KSTPPQTSRN SDSTSTRSPS SSSGEAQSRT 480 DRIVFKLFGK DPSDFPLVLR SQILNWLSHS PTEIESYIRP GCIILTIYLR LEKSTWEELC 540 SNLGLSLKKL IAASNDPFWT TGWVYTRVQH SVAFLYNGQV VLDVPLRLKS PQDCRISCIK 600 PLAVPASASS QFIVKGFNLL RSSTRLLCAL EGTYLVQDSC HDLNDGADVA NAAIQRLSFS 660 CYIPNVSGRG FIEVEDHGLG CCSFPFIVAE QEVCSEICKL ETVIEAGEAT DVIQITNQQS 720 EEKTRALDFI QEMGWLLHRR HVNIRLGPVS PIHDLFCFNR FMWLVDFSMD HGWCAVMKKL 780 LDILFEGGVV DAGEHATIEV ALLDMSLLHS AVKRNCRPMV ELLLKFVPVN TSDGTDSKVK 840 QVDKSLARFL FRPDAVGPGG LTPLHVAASM SGSENVLDAL TDDPGMVGIE AWESARDNTG 900 LTPNDYASLR GHYTYIQLVQ KKTSKKGGRQ CVLDIPGTLV DSYTKQKQSE RHGTSKVSSL 960 QTVKIETTTV PLQCGLCKHK QAYGGMRPAL VYRPVMLSMV TIAAVCVCVA LFFKSLPRVY 1020 MTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 153 | 227 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7619 | 0.0 | floral bud| flower| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2249130.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226057.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_020226058.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A445K0J3 | 0.0 | A0A445K0J3_GLYSO; Squamosa promoter-binding-like protein 1 isoform A | ||||
STRING | GLYMA07G36180.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |