PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2249130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 569aa    MW: 62449.8 Da    PI: 8.3529
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2249130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.16.9e-40153229177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqv++C+adls+ak+yhrrhkvCe hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrr+k+
  Lj4g3v2249130.1 153 VCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRRKT 229
                      6************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-31150215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-36152231IPR004333Transcription factor, SBP-box
PfamPF031103.2E-29154228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEAEFGGKNP FLYGPEMKGV GNGKRSLEWD LNDWKWDGDL FTAQPLNSVP SDCRGGQFFP  60
PAPEFPAKTA NLSSNLSASV NSGEGKRELE KRRRGVTVRG EGEGDEGNDG NGSLNLNLGG  120
QVYPVMVEGE EKIGKKTRVI ETTATATTFN RAVCQVQDCR ADLSSAKDYH RRHKVCEGHS  180
KATMALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNRRRRRKTH PDAEVNGEAL  240
NDERGSSYLL TSLIRILSNM HSNSSDHTRN IDFLSHLLSN LASLAGIING RSLASILEGS  300
QGLVNAGTPR LEHNVPILNS SGLETSRPSG SSIKTDNDFI HQDPPNSAAH CETLPAYGIG  360
QKCIPLGDGG VRNIKPPSGP HPSNLLLSRD SLPSELIAAQ TTAGRNSLNN IDLNNVYDDA  420
QNGVEKKTHP PVASEIGSTY LPSWLRSDSL KSTPPQTSRN SDSTSTRSPS SSSGEAQSRT  480
DRIVFKLFGK DPSDFPLVLR SQILNWLSHS PTEIESYIRP GCIILTIYLR LEKSTWEELC  540
SNLGLSLKKL IAASNDPFWT TGWVYTRVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-311532271084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.106340.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2249130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027330299.10.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_027330300.10.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_027330301.10.0squamosa promoter-binding-like protein 1 isoform X1
TrEMBLA0A445K0J30.0A0A445K0J3_GLYSO; Squamosa promoter-binding-like protein 1 isoform A
TrEMBLA0A445K0M20.0A0A445K0M2_GLYSO; Squamosa promoter-binding-like protein 1 isoform B
TrEMBLA0A445K0N40.0A0A445K0N4_GLYSO; Squamosa promoter-binding-like protein 1 isoform C
STRINGGLYMA07G36180.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.15e-47squamosa promoter binding protein-like 1