PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2180390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 380aa MW: 42924.3 Da PI: 7.9717 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.8 | 1.1e-24 | 75 | 118 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Lj4g3v2180390.1 75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118 79***************************************987 PP | |||||||
2 | QLQ | 53.5 | 7.2e-19 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT +Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ Lj4g3v2180390.1 10 PFTSSQWQELEHQALIYKYMASGISIPPDLLFTIK 44 8******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.9E-10 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.416 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-14 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 75 | 119 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 76 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MMNGSRNRFP FTSSQWQELE HQALIYKYMA SGISIPPDLL FTIKMDSPLT SRLLPHQSQH 60 FGWNYLPMGL GRKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVL 120 KTTPTTAIDA GDASAAPTTM LSITKNSPAL TPTTTHDPYH HHHHPQNSSY GSSSSHLQHP 180 FLYHHSPPSR PSGVGLSFQD NNSAPMFLDT GSCSHNNNTD CRYVYGLKEE VDEHAFFTEP 240 SGTMRSFSAS SIDDPWQLTP LTISSSSSSK QRNCSGLSNS NDTNNNNEYS YLQLQSLSDN 300 SKQTHQDHGF YSDNKPENFM KLGKEEPQKT VHRFFDEWPP KSRGSWLDLD DKSSTTQLSI 360 SIPTSSHDFK TFSSSTPRDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2180390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-61 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154592.1 | 0.0 | hypothetical protein PHAVU_003G131800g | ||||
TrEMBL | V7CCG7 | 0.0 | V7CCG7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154592.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-53 | growth-regulating factor 5 |