PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2180390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRF
Protein Properties Length: 380aa    MW: 42924.3 Da    PI: 7.9717
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2180390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2475118144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Lj4g3v2180390.1  75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
                      79***************************************987 PP

2QLQ53.57.2e-191044236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     +FT +Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Lj4g3v2180390.1 10 PFTSSQWQELEHQALIYKYMASGISIPPDLLFTIK 44
                     8******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-10945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.4161045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-141043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9875119IPR014977WRC domain
PfamPF088791.3E-2076118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MMNGSRNRFP FTSSQWQELE HQALIYKYMA SGISIPPDLL FTIKMDSPLT SRLLPHQSQH  60
FGWNYLPMGL GRKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVL  120
KTTPTTAIDA GDASAAPTTM LSITKNSPAL TPTTTHDPYH HHHHPQNSSY GSSSSHLQHP  180
FLYHHSPPSR PSGVGLSFQD NNSAPMFLDT GSCSHNNNTD CRYVYGLKEE VDEHAFFTEP  240
SGTMRSFSAS SIDDPWQLTP LTISSSSSSK QRNCSGLSNS NDTNNNNEYS YLQLQSLSDN  300
SKQTHQDHGF YSDNKPENFM KLGKEEPQKT VHRFFDEWPP KSRGSWLDLD DKSSTTQLSI  360
SIPTSSHDFK TFSSSTPRDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2180390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-61AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154592.10.0hypothetical protein PHAVU_003G131800g
TrEMBLV7CCG70.0V7CCG7_PHAVU; Uncharacterized protein
STRINGXP_007154592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-53growth-regulating factor 5