PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2120630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 762aa MW: 86910.3 Da PI: 7.6309 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.5 | 3.4e-21 | 32 | 120 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrksks.kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y+e+A ++GFsvrk ++ ++ +++++i ++f+Csk+g++++e++ + +r +rt+Cka+++ + +kdg+w+vtkl+ +HnH+++p Lj4g3v2120630.1 32 LYQEHAFKMGFSVRKGRMlYYDSEKKNIRLKDFYCSKQGFKNNEREG--EVAYERGDSRTNCKAMVRFSVTKDGVWKVTKLVMDHNHDFVP 120 7**************9872555788899***************9988..888999********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-18 | 32 | 120 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-32 | 239 | 332 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.654 | 519 | 557 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.5E-4 | 527 | 552 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MEDNECQPLE TDETKEICVG QVVHSLEEAY NLYQEHAFKM GFSVRKGRML YYDSEKKNIR 60 LKDFYCSKQG FKNNEREGEV AYERGDSRTN CKAMVRFSVT KDGVWKVTKL VMDHNHDFVP 120 PQQRHLLRSM RKLSEGGLIK SIVNGDIKVT NVRSYLGEEV GGVDELGITM KDVHNHVYTE 180 KPKLIEAGDA QSLLNQLQSR QAQDAMFYYS VQLDQESRLT NVFWRDGKSK VDYDCFGDVV 240 VFDTTYRTNK YNLICAPFVG VNHHWQNVMF GCALLSDETS ASFTWLFKVF LESMGNKQPK 300 TIFTDQDAAM GKAIEEVMPN TIHQLCLSHV AKTAPSHLGN LNSNHKFQSL FRKCMSGCDS 360 KEEFESTWNE MVNEYQLHDH QWLSSMFKIR HKWSTAYSKG VFSADIESSQ RSESKNSLLG 420 EIAGKTTTLT QFVLAFEKMV KKWRQLEAEK EFKNSQSMPP RIINISETLR HASMIYTHKI 480 FKLFLNEYLD GTGGSTSIEI SVCDDVSNHE VTLNHMPNKK HVVAFDSSTL MINCNCQKFS 540 SMGILCSHAL RIYNIKGILR IPDQYFLKRW SKNARSVIYD RTHKGSKEDS SSNCIDSMTT 600 GDDAGILYHH AILKSLYNLV LESQGHKETQ QIMWNLLDVG VERVHQHINK QSLNSSAIAN 660 ENTSPQNEDD EHVTICNPLS AETEGMSGAH KKGHFEKRKR STTKAKQNKE QRKEENFCTV 720 GSSMVEPSSV PHASVAAPLK EQHLSTWGSY TGSFHSLACY KK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2120630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010463 | 0.0 | AP010463.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT44F21, TM1953, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636348.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A396GJD5 | 0.0 | A0A396GJD5_MEDTR; Putative transcription factor FAR family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-109 | FAR1-related sequence 5 |