PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2120630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 762aa    MW: 86910.3 Da    PI: 7.6309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2120630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.4e-2132120291
             FAR1   2 fYneYAkevGFsvrksks.kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       Y+e+A ++GFsvrk ++ ++ +++++i  ++f+Csk+g++++e++   +   +r  +rt+Cka+++ + +kdg+w+vtkl+ +HnH+++p
  Lj4g3v2120630.1  32 LYQEHAFKMGFSVRKGRMlYYDSEKKNIRLKDFYCSKQGFKNNEREG--EVAYERGDSRTNCKAMVRFSVTKDGVWKVTKLVMDHNHDFVP 120
                      7**************9872555788899***************9988..888999********************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1832120IPR004330FAR1 DNA binding domain
PfamPF105511.5E-32239332IPR018289MULE transposase domain
PROSITE profilePS509668.654519557IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-4527552IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MEDNECQPLE TDETKEICVG QVVHSLEEAY NLYQEHAFKM GFSVRKGRML YYDSEKKNIR  60
LKDFYCSKQG FKNNEREGEV AYERGDSRTN CKAMVRFSVT KDGVWKVTKL VMDHNHDFVP  120
PQQRHLLRSM RKLSEGGLIK SIVNGDIKVT NVRSYLGEEV GGVDELGITM KDVHNHVYTE  180
KPKLIEAGDA QSLLNQLQSR QAQDAMFYYS VQLDQESRLT NVFWRDGKSK VDYDCFGDVV  240
VFDTTYRTNK YNLICAPFVG VNHHWQNVMF GCALLSDETS ASFTWLFKVF LESMGNKQPK  300
TIFTDQDAAM GKAIEEVMPN TIHQLCLSHV AKTAPSHLGN LNSNHKFQSL FRKCMSGCDS  360
KEEFESTWNE MVNEYQLHDH QWLSSMFKIR HKWSTAYSKG VFSADIESSQ RSESKNSLLG  420
EIAGKTTTLT QFVLAFEKMV KKWRQLEAEK EFKNSQSMPP RIINISETLR HASMIYTHKI  480
FKLFLNEYLD GTGGSTSIEI SVCDDVSNHE VTLNHMPNKK HVVAFDSSTL MINCNCQKFS  540
SMGILCSHAL RIYNIKGILR IPDQYFLKRW SKNARSVIYD RTHKGSKEDS SSNCIDSMTT  600
GDDAGILYHH AILKSLYNLV LESQGHKETQ QIMWNLLDVG VERVHQHINK QSLNSSAIAN  660
ENTSPQNEDD EHVTICNPLS AETEGMSGAH KKGHFEKRKR STTKAKQNKE QRKEENFCTV  720
GSSMVEPSSV PHASVAAPLK EQHLSTWGSY TGSFHSLACY KK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2120630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104630.0AP010463.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT44F21, TM1953, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636348.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A396GJD50.0A0A396GJD5_MEDTR; Putative transcription factor FAR family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-109FAR1-related sequence 5