PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2046130.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

DBB

Protein Properties

Length: 250aa MW: 27096.3 Da PI: 5.0764

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2046130.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.7	9.9e-08	15	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + lfC+ ++ +lC +C +++H+ H+ Lj4g3v2046130.1 15 KPCDSCKLASAALFCRPDSAFLCISCDSKIHSVnklasrHE 55 78****99*******************4355666665 PP
2	zf-B_box	29.5	1.5e-09	57	102	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C + +H+ H++vp+ Lj4g3v2046130.1 57 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 102 689****************************6689999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.4E-11	12	59	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.054	12	59	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-6	14	56	IPR000315	B-box-type zinc finger
CDD	cd00021	1.20E-5	16	59	No hit	No description
PROSITE profile	PS50119	11.007	55	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.6E-7	56	102	IPR000315	B-box-type zinc finger
CDD	cd00021	4.15E-8	58	102	No hit	No description
SMART	SM00336	1.7E-10	60	102	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGLEGLRSGW SVPPKPCDSC KLASAALFCR PDSAFLCISC DSKIHSVNKL ASRHERVWMC 60 EVCEQAPASV TCKADAAALC VTCDSDIHSA NPLARRHERV PVEPFFDSAE SIVKSSSAAA 120 AATAASFGFV VPTDEAFASH DDADAAAWLM PDPNFGSKLI DAPDVKSREM FFSELDPFLD 180 FDYTNSFQNN NNHNGGNDSV VPVQTKPLPP HPAPMMNHHT EGCFDIDFCR SKLSSSFNYP 240 SQSLSQSVSR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.445	0.0	cell culture\| floral bud\| pod\| protoplast\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2046130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507813.1	1e-131	zinc finger protein CONSTANS-LIKE 5 isoform X2
Swissprot	Q9FHH8	3e-75	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A371G596	1e-133	A0A371G596_MUCPR; Zinc finger protein CONSTANS-LIKE 5 (Fragment)
STRING	XP_004507812.1	1e-130	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	3e-67	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]