PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1876790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 508aa    MW: 57370.5 Da    PI: 5.9669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1876790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-0784107327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +f+  G+C+ GdrC+F Hgp
  Lj4g3v1876790.1  84 MVPCYYFYN-GFCNKGDRCSFLHGP 107
                      689******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.737635IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-11761No hitNo description
SMARTSM003560.002734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3713763IPR000571Zinc finger, CCCH-type
SMARTSM003560.63962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-781109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.95381108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-682106IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-482107IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-584107IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDEDLLKRNT DCVYFLASPL TCKKGAECEY RHNEVARLNP RDCWYWLSGS CLNPTCAFRH  60
PPLDGHTGGP SEPAKSSLPP YKTMVPCYYF YNGFCNKGDR CSFLHGPDDS FLSAKPVKND  120
NGSTTSTLKL ENKTSSGNKT GVASTPSETH VDQSLTASKA SSDFKLQPKE DPQLPLPENV  180
GQKGDCLELS ALDCKAASVT GSDSLLPDDG FVRKTSDLHT EESSEEQVNS HIEPEERWES  240
SPGFDVLVQD ESEILGYEDD SEYLPVLDMD DQGLNEQYSG YEFKDPAEYD TMCPDDDILY  300
EQGTNDVYRC FDRDFMYANG GKNHAYTREI ILDSIFSRKR IHISDLRDHL RGRREINGPP  360
GTDFLRRDES PLMFQNQERH QRRSIHQRLS RRLTSELGFS TIDSTGQVEA LSIANKHGAF  420
RHSQQHRPRK HYREKQQFPS SKVSKKPASK RRRFVQESTA FSGPKTLAEI KEEKMKKAEG  480
SLHCESTSSG FENPEPLSEI VKGKRTTG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.201540.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1876790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332457.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A445KI250.0A0A445KI25_GLYSO; Zinc finger CCCH domain-containing protein 34 isoform A
TrEMBLK7KNK60.0K7KNK6_SOYBN; Uncharacterized protein
STRINGGLYMA05G08496.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823