PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1865750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 341aa    MW: 37903.1 Da    PI: 7.2495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1865750.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-0888112126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC  f+  G C+ G++C+FaHg
  Lj4g3v1865750.1  88 FKTRLCAKFRH-GSCRNGETCNFAHG 112
                      69*******99.*************9 PP

2zf-CCCH27.26.6e-09149173125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +k++lC+ ++ + +C+yG++C+F H
  Lj4g3v1865750.1 149 QKMKLCKKYYNGEECPYGEKCSFLH 173
                      5999*******66************ PP

3zf-CCCH42.11.5e-13233259127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  + +tG C++G+ C+FaHg+
  Lj4g3v1865750.1 233 WKTKLCIKWDKTGNCPFGEDCHFAHGE 259
                      8************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1384120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-785118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75687114IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-487113IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-688112IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69148176IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-9150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-16228264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-10231263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915232260IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6232259IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-11233259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTFPDHLPTF AMMSPARFSS DSDAIDVRHQ FPMSNEPLNP RSGFDQAPPF KRARNFDNGH  60
SNGLSGPPRA NQQPQNSQPN RGTSHIFFKT RLCAKFRHGS CRNGETCNFA HGVDDMRQPP  120
PNWQEIVGLR GGDERPLSGN WDDDQKIIQK MKLCKKYYNG EECPYGEKCS FLHEDPGKFR  180
DDSGRFRESS AISIGTNGSP KSYGDGSNNS EGNSKAVDTG SNISKGNVKS TYWKTKLCIK  240
WDKTGNCPFG EDCHFAHGEG ELQVPGGRTE VESAAVATLP KALSVAANEA TTTHAASETP  300
MDEDEQAKKR LQKWKINKKI NRIYGDWIDD LPLVIPSEME T
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1865750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329965.11e-177zinc finger CCCH domain-containing protein 39
SwissprotQ9LT814e-91C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A445G5I11e-169A0A445G5I1_GLYSO; Zinc finger CCCH domain-containing protein 39
TrEMBLK7ML631e-169K7ML63_SOYBN; Uncharacterized protein
STRINGGLYMA17G12560.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-93C3H family protein