PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj4g3v1865750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 37903.1 Da PI: 7.2495 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.9e-08 | 88 | 112 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f+ G C+ G++C+FaHg Lj4g3v1865750.1 88 FKTRLCAKFRH-GSCRNGETCNFAHG 112 69*******99.*************9 PP | |||||||
2 | zf-CCCH | 27.2 | 6.6e-09 | 149 | 173 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lC+ ++ + +C+yG++C+F H Lj4g3v1865750.1 149 QKMKLCKKYYNGEECPYGEKCSFLH 173 5999*******66************ PP | |||||||
3 | zf-CCCH | 42.1 | 1.5e-13 | 233 | 259 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + +tG C++G+ C+FaHg+ Lj4g3v1865750.1 233 WKTKLCIKWDKTGNCPFGEDCHFAHGE 259 8************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-13 | 84 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-7 | 85 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-6 | 88 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.69 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-9 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-16 | 228 | 264 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-10 | 231 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 232 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 232 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-11 | 233 | 259 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MTFPDHLPTF AMMSPARFSS DSDAIDVRHQ FPMSNEPLNP RSGFDQAPPF KRARNFDNGH 60 SNGLSGPPRA NQQPQNSQPN RGTSHIFFKT RLCAKFRHGS CRNGETCNFA HGVDDMRQPP 120 PNWQEIVGLR GGDERPLSGN WDDDQKIIQK MKLCKKYYNG EECPYGEKCS FLHEDPGKFR 180 DDSGRFRESS AISIGTNGSP KSYGDGSNNS EGNSKAVDTG SNISKGNVKS TYWKTKLCIK 240 WDKTGNCPFG EDCHFAHGEG ELQVPGGRTE VESAAVATLP KALSVAANEA TTTHAASETP 300 MDEDEQAKKR LQKWKINKKI NRIYGDWIDD LPLVIPSEME T |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj4g3v1865750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027329965.1 | 1e-177 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 4e-91 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A445G5I1 | 1e-169 | A0A445G5I1_GLYSO; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | K7ML63 | 1e-169 | K7ML63_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G12560.2 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-93 | C3H family protein |