PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1787120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 309aa    MW: 33848.6 Da    PI: 7.0749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1787120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-10856446
                     S-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46
                     W  eE++ + +a++++ ++       +W++Ia++++ +++ +++k ++q 
  Lj4g3v1787120.1  8 WNYEEEKAFENAIAMHWNDeeaeseeQWEKIASEVP-NKSMEEVKQHYQA 56
                     999*********************************.***********95 PP

2Myb_DNA-binding38.92.1e-12136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Lj4g3v1787120.1 136 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 180
                      7*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.64361IPR017884SANT domain
SMARTSM007179.8E-6460IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-9662IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-5759IPR009057Homeodomain-like
CDDcd001672.07E-5858No hitNo description
PfamPF002493.9E-8856IPR001005SANT/Myb domain
PROSITE profilePS5129417.097129185IPR017930Myb domain
SuperFamilySSF466893.8E-17130186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17132183IPR006447Myb domain, plants
SMARTSM007172.3E-10133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-11134179IPR009057Homeodomain-like
PfamPF002497.7E-11136180IPR001005SANT/Myb domain
CDDcd001671.09E-9136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSGTIWNY EEEKAFENAI AMHWNDEEAE SEEQWEKIAS EVPNKSMEEV KQHYQALVDD  60
VSAIEGGLVP FPNYVAEETT SSNKDFHGSH KSNSSDKRSS CNFGSGFSGL GHDSATHSGK  120
GSLSRSSEQE RKKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP TQVASHAQKY  180
FIRLNSMNRD RRRSSIHDIT SVNNGDVASN QAPITGQHGS TIPPSTMGVG VGHSLKHRVQ  240
PHHIPGGLGM YGTPVGHPVV AAPPGHMASA VGTPVMLPPG HHHPHPHPHP HPPYVVPLAY  300
PMAPPTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-13483779RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.258510.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1787120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462530.0BT146253.1 Lotus japonicus clone JCVI-FLLj-17M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507110.10.0transcription factor MYBS1
SwissprotQ9FNN64e-82SRM1_ARATH; Transcription factor SRM1
TrEMBLI3T0K50.0I3T0K5_LOTJA; Uncharacterized protein
STRINGXP_007155139.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.15e-68MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]