PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1787030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 388aa    MW: 44052.8 Da    PI: 7.2151
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1787030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.74e-421242683134
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.nsssg....... 88 
                       k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt++WLl+qak +ik l++ ++ ++ +c+ ++ssss+s  +  g       
  Lj4g3v1787030.1 124 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNLHHPSCSGAKSSSSTSeGE--Gvsgldev 215
                      69*************************************************************999999994444444444123..13467777 PP

              TCP  89 ......kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                            +++k+++   k++ ++   ++++++  r+kar+rarertrek r+k+
  Lj4g3v1787030.1 216 visenqEQEKEQQpIVKRRANKVCRKSAFNAIGREKARERARERTREKLRTKK 268
                      777776444444447777777777888999999****************9984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-41124265IPR005333Transcription factor, TCP
PROSITE profilePS5136933.405125183IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.833246263IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFSSNSSLNG NDLISSSSYP NNNQAFIFSR HFSFESNLTS KDETNCPLSL LQFPYSPFED  60
HENIFPEQHH DFSLQQHQSL PEPVVNNNMD ASINNNKNNS IPGTCSVVGK GTATEQVAVR  120
RRSSKRDRHS KINTARGLRD RRMRLSLEVA KRFFGLQDML GFDKASKTVD WLLNQAKVEI  180
KHLAREKNLH HPSCSGAKSS SSTSEGEGVS GLDEVVISEN QEQEKEQQPI VKRRANKVCR  240
KSAFNAIGRE KARERARERT REKLRTKKLA DDKESKQCKE VTNHNLNLWN PFETVEESAG  300
THQSQSVNNH PSLDLLAEAE KEPSSQAKEN SGTVVDDDMS HEDSFLIMSK WSPTMMFNSL  360
SNSEILQEHQ FAEFQPLGKQ WEAYNNRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1787030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096290.0AP009629.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjB15O07, BM1698, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431553.11e-133PREDICTED: transcription factor DICHOTOMA
TrEMBLQ1WK550.0Q1WK55_LOTJA; CYC5
STRINGGLYMA05G07943.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-21TCP family protein