PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1736210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Dof | ||||||||
Protein Properties | Length: 290aa MW: 30957.6 Da PI: 6.9499 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1.1e-38 | 34 | 94 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+ k+s Lj4g3v1736210.1 34 NNQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSTKRS 94 6799****************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-26 | 33 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.4E-33 | 36 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MQEIHPIGGG GGGGGGSRFF GGADRRLRPH HQQNNQALKC PRCDSINTKF CYYNNYNLSQ 60 PRHFCKNCRR YWTKGGVLRN VPVGGGCRKS TKRSSKPKNS SSSETTDLQL PEPEHNSNSH 120 SSSESSSLTA AVTEAVSAPA LNSDPNSNNM HESKLLNSVL DANALEQAGT GDCGGGGIFS 180 EIGNFTSLIA SSSTTNDALA FGFGNNNGIP PDASSFQWQH HHPGEQELKL QGNILSAAAG 240 GNGGGFGSLD WHSGGADHQG LFDLPNTVDQ AYWNHTHWSD HDNSTLFHLP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1736210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009769 | 0.0 | AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506030.1 | 1e-103 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A371FX88 | 1e-104 | A0A371FX88_MUCPR; Dof zinc finger protein DOF5.4 (Fragment) | ||||
STRING | XP_007155202.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-36 | OBF binding protein 4 |