PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1440760.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 363aa    MW: 40639.3 Da    PI: 6.4333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1440760.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  Lj4g3v1440760.1 14 KGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.44.4e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
  Lj4g3v1440760.1  67 RGMFSQQEEDLIINLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.443961IPR017930Myb domain
SuperFamilySSF466891.12E-2812108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001676.42E-111761No hitNo description
PROSITE profilePS5129424.45762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007171.4E-1366114IPR001005SANT/Myb domain
PfamPF002496.0E-1467111IPR001005SANT/Myb domain
CDDcd001671.11E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRHSCCVKQ KLRKGLWSPE EDEKLFNHIT RFGVGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIN LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLT DAHVKEESKS PDTTPMQIPM SQGTLATSTF GSSLVISDSN HYDGVLTEAS  180
RELFMSKSAL DSLSYYDFQI GGSVQSGYNN LPFTHYQSFG PSSSHGFSSM PSLTQSDHGN  240
MSSVVTEFSN NNSASKISSL FMNDQVKESS SISSNMSTIY PGGSHSQMRS LMENAGFSWD  300
NGDNKLDPLF QFQVNGIKSE DFRTSSWEEG QLQNQNSIDF TSCPLTSLSE DLTEANFDVF  360
QHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.219130.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1440760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060940.0AP006094.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT39H01, TM0172, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332330.10.0myb-related protein 330-like
TrEMBLA0A0R0JXT10.0A0A0R0JXT1_SOYBN; Uncharacterized protein
TrEMBLA0A445KJU10.0A0A445KJU1_GLYSO; Transcription factor MYB86
STRINGGLYMA05G02550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-82myb domain protein 55