PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1389250.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 514aa    MW: 55805.2 Da    PI: 4.6582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1389250.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.1e-10182204426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+f+++tG Ck+G  C+F+H+
  Lj4g3v1389250.2 182 EDCSFYMKTGSCKFGFHCRFNHP 204
                      89********************8 PP
2zf-CCCH26.88.8e-09230250525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++++r+G Ck+G  Ck++H
  Lj4g3v1389250.2 230 ECKYYLRSGGCKFGKACKYNH 250
                      7******************** PP
3zf-CCCH42.41.2e-13271295226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+f++rtG CkyG++C+F+H+
  Lj4g3v1389250.2 271 GERECPFYMRTGSCKYGANCRFNHP 295
                      5799********************9 PP
4zf-CCCH29.11.7e-09401427127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f++tG Ck+ ++CkF+H++
  Lj4g3v1389250.2 401 PGEPECSYFLKTGACKFKSNCKFHHPR 427
                      5799*********************96 PP
5zf-CCCH31.92.3e-10449472326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +  C++++r+G+Ck+G+ C++ H+
  Lj4g3v1389250.2 449 QNVCSHYSRYGICKFGPACRYDHP 472
                      568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.183178206IPR000571Zinc finger, CCCH-type
SMARTSM003560.002178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5179206IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7182204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319225253IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019225252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5228253IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6230250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4231252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657269297IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6269296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6270296IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-11271295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5275294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267400428IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5400427IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7402427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6405429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6444472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821446474IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4446473IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-8449472IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEPSESDSPA AVTNGDNNPQ QQQQLGSEPS SPVAHPPPPS DLNHAAEEDD DDALGGEFQN  60
KLDLKGEDDG GAETGEKASD DGGVCDAESV KGGEGFDGDS RGWDNSSWGE NVIEEVGREA  120
YGGGDFDGDD GLEQNDEVGI EAFGGRDFDV DVDVDVDGVE QNEEKTSGGS GTSNYPLRPD  180
AEDCSFYMKT GSCKFGFHCR FNHPIRRRTQ AVKEKAGERE EPTERSSLTE CKYYLRSGGC  240
KFGKACKYNH TRGSSSTAPK LNFIGLPIRL GERECPFYMR TGSCKYGANC RFNHPDPTSV  300
GGSDPPPGYG NVGSFKGASP SVPSWSSSKT LNETSFMPMI LKPSQGVSPQ NSDWNGYQAP  360
VYLSERSMHP TSAYVMNPAI ETNAYMHRQR QMPVEEYPER PGEPECSYFL KTGACKFKSN  420
CKFHHPRNRV ARLPPCILSD KGLPLRPDQN VCSHYSRYGI CKFGPACRYD HPIDPLPVMM  480
PGLGLQSYPN SADVEMAGLG GSAGASDVRI QQSV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.27491e-178floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1389250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515843.10.0zinc finger CCCH domain-containing protein 43-like
RefseqXP_027334998.10.0zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-127C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S2Z6B90.0A0A1S2Z6B9_CICAR; zinc finger CCCH domain-containing protein 43-like
STRINGXP_004515843.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-125C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]