PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1389110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 509aa    MW: 56700 Da    PI: 6.2006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1389110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.65.1e-1141345081374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPi 90 
                      lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++La+rl+   + + +   +s++  +     s+e   a++l +e++P 
  Lj4g3v1389110.1 134 LVQLLIACAEAVACRDKAHASMLLSELKSNALVFGSSFQRVASCFVQGLAERLTL-IQPIGSGAGVSQSMMNImdaaSEEMEEAYRLVYETCPH 226
                      689**************************************************98.444444444333332223466888999*********** PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      ++f+h++aN++Ilea+ege+ vH++D+++s    +G QW  L+++La+R+   +   +lRiT++g        +l+++g+ L+++A++lg+++e
  Lj4g3v1389110.1 227 IQFGHFVANSTILEAFEGESFVHVVDLGMSlglpHGHQWRGLIHSLANRAsghGRVRRLRITAIGL----CIARLQAIGDELSDYANNLGINLE 316
                      **************************99874444678*************54334669********....************************ PP

             GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      f+v v k+le+l++e+++v+ +Eal+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl
  Lj4g3v1389110.1 317 FSV-VQKNLENLQPEDIKVNDDEALVVNSILQLHCVVKESRGALN---SVLQMIHGLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSL 406
                      **9.8********************************88877777...8********************************************* PP

             GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                      +a lp+ + +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+++p++   ++qak  l k k  dgy+v ee+g+lvlgWk+
  Lj4g3v1389110.1 407 DAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKM--VAQAKQWLLKNKiCDGYTVVEEKGCLVLGWKS 498
                      **********************************************************75..66777777777778****************** PP

             GRAS 365 rpLvsvSaWr 374
                      +p+v++S+W+
  Lj4g3v1389110.1 499 KPIVAASCWK 508
                      *********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.327108489IPR005202Transcription factor GRAS
PfamPF035141.8E-111134508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSPPLYSVLL EDENSVFLLD LDLSSPMGFH AYPHLPILDS SIANWSLPFS ISDETFRESK  60
KLKRTMIPIS SADFSISSSS SLSVSVNSIP RLNFRDHIRT YKRYLAAEEL PEDTNSSESV  120
VGAEEDGCAD GMRLVQLLIA CAEAVACRDK AHASMLLSEL KSNALVFGSS FQRVASCFVQ  180
GLAERLTLIQ PIGSGAGVSQ SMMNIMDAAS EEMEEAYRLV YETCPHIQFG HFVANSTILE  240
AFEGESFVHV VDLGMSLGLP HGHQWRGLIH SLANRASGHG RVRRLRITAI GLCIARLQAI  300
GDELSDYANN LGINLEFSVV QKNLENLQPE DIKVNDDEAL VVNSILQLHC VVKESRGALN  360
SVLQMIHGLS PKVLVMVEQD SSHNGPFFLG RFMESLHYYS AIFDSLDAML PKYDTKRAKM  420
EQFYFAEEIK NIVSCEGPLR MERHERVDQW RRRMSRAGFQ AAPIKMVAQA KQWLLKNKIC  480
DGYTVVEEKG CLVLGWKSKP IVAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6414150726378Protein SCARECROW
5b3h_A1e-6414150725377Protein SCARECROW
5b3h_D1e-6414150725377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1389110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334201.10.0DELLA protein GAI1-like
TrEMBLA0A1B1WAJ00.0A0A1B1WAJ0_LOTJA; Required for arbuscule development 1
STRINGGLYMA17G13680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-79RGA-like 1