PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1389110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 509aa MW: 56700 Da PI: 6.2006 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 372.6 | 5.1e-114 | 134 | 508 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPi 90 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++La+rl+ + + + +s++ + s+e a++l +e++P Lj4g3v1389110.1 134 LVQLLIACAEAVACRDKAHASMLLSELKSNALVFGSSFQRVASCFVQGLAERLTL-IQPIGSGAGVSQSMMNImdaaSEEMEEAYRLVYETCPH 226 689**************************************************98.444444444333332223466888999*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 ++f+h++aN++Ilea+ege+ vH++D+++s +G QW L+++La+R+ + +lRiT++g +l+++g+ L+++A++lg+++e Lj4g3v1389110.1 227 IQFGHFVANSTILEAFEGESFVHVVDLGMSlglpHGHQWRGLIHSLANRAsghGRVRRLRITAIGL----CIARLQAIGDELSDYANNLGINLE 316 **************************99874444678*************54334669********....************************ PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 f+v v k+le+l++e+++v+ +Eal+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl Lj4g3v1389110.1 317 FSV-VQKNLENLQPEDIKVNDDEALVVNSILQLHCVVKESRGALN---SVLQMIHGLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSL 406 **9.8********************************88877777...8********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364 +a lp+ + +r+k+E++++++ei+n+v+ceg r erhe++ +Wr+r+++aGF+++p++ ++qak l k k dgy+v ee+g+lvlgWk+ Lj4g3v1389110.1 407 DAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKM--VAQAKQWLLKNKiCDGYTVVEEKGCLVLGWKS 498 **********************************************************75..66777777777778****************** PP GRAS 365 rpLvsvSaWr 374 +p+v++S+W+ Lj4g3v1389110.1 499 KPIVAASCWK 508 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.327 | 108 | 489 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-111 | 134 | 508 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MSPPLYSVLL EDENSVFLLD LDLSSPMGFH AYPHLPILDS SIANWSLPFS ISDETFRESK 60 KLKRTMIPIS SADFSISSSS SLSVSVNSIP RLNFRDHIRT YKRYLAAEEL PEDTNSSESV 120 VGAEEDGCAD GMRLVQLLIA CAEAVACRDK AHASMLLSEL KSNALVFGSS FQRVASCFVQ 180 GLAERLTLIQ PIGSGAGVSQ SMMNIMDAAS EEMEEAYRLV YETCPHIQFG HFVANSTILE 240 AFEGESFVHV VDLGMSLGLP HGHQWRGLIH SLANRASGHG RVRRLRITAI GLCIARLQAI 300 GDELSDYANN LGINLEFSVV QKNLENLQPE DIKVNDDEAL VVNSILQLHC VVKESRGALN 360 SVLQMIHGLS PKVLVMVEQD SSHNGPFFLG RFMESLHYYS AIFDSLDAML PKYDTKRAKM 420 EQFYFAEEIK NIVSCEGPLR MERHERVDQW RRRMSRAGFQ AAPIKMVAQA KQWLLKNKIC 480 DGYTVVEEKG CLVLGWKSKP IVAASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-64 | 141 | 507 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-64 | 141 | 507 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-64 | 141 | 507 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1389110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334201.1 | 0.0 | DELLA protein GAI1-like | ||||
TrEMBL | A0A1B1WAJ0 | 0.0 | A0A1B1WAJ0_LOTJA; Required for arbuscule development 1 | ||||
STRING | GLYMA17G13680.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-79 | RGA-like 1 |