PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1273510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 259aa    MW: 28972.3 Da    PI: 5.1246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1273510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05165187123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F+++  L +H + +
  Lj4g3v1273510.1 165 HQCENCGKKFRSSGALGSHKSIC 187
                      79*****************9876 PP
2zf-C2H211.80.00075200222123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C k+F +   L  H r+H
  Lj4g3v1273510.1 200 FQCPFCEKVFGSGQALGGHKRSH 222
                      89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035531165185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.56E-8165222No hitNo description
PROSITE profilePS501579.411165194IPR007087Zinc finger, C2H2
PfamPF139120.015165186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-4196222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016200222IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868200222IPR007087Zinc finger, C2H2
PfamPF139121.9E-10200222IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKAHLAPLPL PPKPQPLSNH NHTASFSYSL SSSEEEEEAE EKPLIYGLRE NPKKSFRLSD  60
PESVVQDRES ETESKNPTRR RSKRTRKPLQ NPKLMSFMDS PEPVSSVSDT SPDEDVAMCL  120
MMLSRDSWRI SNNVDVNVVV VVKEEEEMKS EGFPEINFRK VRGKHQCENC GKKFRSSGAL  180
GSHKSICVDD DEEVSDDKIF QCPFCEKVFG SGQALGGHKR SHLYPSSSST ASGFKQTFFD  240
LNLPASPEED DDLSVVSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1273510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1410690.0BT141069.1 Lotus japonicus clone JCVI-FLLj-17K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217928.13e-89zinc finger protein ZAT9
TrEMBLI3SKS11e-117I3SKS1_LOTJA; Uncharacterized protein
STRINGXP_007157307.15e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-32C2H2-like zinc finger protein