PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1259070.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 304aa    MW: 33510.4 Da    PI: 8.5572
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1259070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ C++sF +   L  H++ H
  Lj4g3v1259070.1  4 HKCKLCSRSFANGRALGGHMKAH 26
                     79******************998 PP
2zf-C2H212.20.00054205225323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+++  L +H +++
  Lj4g3v1259070.1 205 CENCGKAFRSSRALGSHRSVC 225
                      *****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.38E-5329No hitNo description
PROSITE profilePS5015710.803431IPR007087Zinc finger, C2H2
SMARTSM003550.041426IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-7428IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621203224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-7203263No hitNo description
SMARTSM00355120203223IPR015880Zinc finger, C2H2-like
PfamPF139120.034203222IPR007087Zinc finger, C2H2
SMARTSM003550.2241263IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-11241264IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKHKCKLCS RSFANGRALG GHMKAHLAAL PLPPKPEQKQ SFTSLSFSSS ASESQQEEDD  60
DEVLALRESE EKAMIYGLRE NPKKSCRVAD PKFSFAPDTG FLVQDRESET ESKNPTRQRS  120
KRNRRNQNQN SEEPRKVKMS FTVPASPEPP LSSVSDTSPE EDVARCLMML SRDNWTRNNN  180
NNHSVGCSSS KEKIKFKRVR GKHGCENCGK AFRSSRALGS HRSVCCVDAK GEGNGSDEKI  240
FECPFCYKVF GSGQALGGHK RSHLIASSSS NANNVGCGRL KQSLIDLNLP APPEEDDLSV  300
VSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1259070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0079900.0AP007990.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjT08A19, TM1321, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336502.11e-115zinc finger protein ZAT4-like
TrEMBLA0A2N9GHN81e-115A0A2N9GHN8_FAGSY; Uncharacterized protein
STRINGAES909011e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-43C2H2-like zinc finger protein