PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1223860.1 | ||||||||
Common Name | LjPAP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 197aa MW: 22542.2 Da PI: 6.7756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.9 | 6.5e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++l+++++ +G + WktIa + g++R++k+c++rw++yl Lj4g3v1223860.1 16 RGVWTQEEDQKLAQCIEAHGAKKWKTIAVKSGLNRCGKSCRLRWLNYL 63 899*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.1e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Lj4g3v1223860.1 69 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.775 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-11 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.975 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 71 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAPKNASGPA KKAMNRGVWT QEEDQKLAQC IEAHGAKKWK TIAVKSGLNR CGKSCRLRWL 60 NYLRPNIKRG NISDEEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLCKKLNQ 120 EAEKPETSTA QETIVQNQFT EDSAMLQNKD VVNGSGSSDD SFDLDEFFNF SSGETFEFDW 180 INKYLELDQV SESTQRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 14 | 119 | 5 | 109 | B-MYB |
1h8a_C | 2e-29 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1223860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB490776 | 0.0 | AB490776.1 Lotus japonicus LjPAP mRNA for R2R3-MYB transcription factor LjPAP, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027335493.1 | 1e-104 | transcription factor MYB114-like | ||||
Swissprot | P10290 | 5e-52 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | C0A1G8 | 1e-145 | C0A1G8_LOTJA; R2R3-MYB transcription factor LjPAP | ||||
STRING | XP_004508935.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-53 | myb domain protein 5 |