PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1223860.1
Common NameLjPAP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 197aa    MW: 22542.2 Da    PI: 6.7756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1223860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.5e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++l+++++ +G + WktIa + g++R++k+c++rw++yl
  Lj4g3v1223860.1 16 RGVWTQEEDQKLAQCIEAHGAKKWKTIAVKSGLNRCGKSCRLRWLNYL 63
                     899*******************************************97 PP

2Myb_DNA-binding538.1e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Lj4g3v1223860.1  69 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7751163IPR017930Myb domain
SuperFamilySSF466897.34E-3014110IPR009057Homeodomain-like
SMARTSM007178.7E-161565IPR001005SANT/Myb domain
PfamPF002493.1E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241870IPR009057Homeodomain-like
CDDcd001673.58E-111963No hitNo description
PROSITE profilePS5129424.97564118IPR017930Myb domain
SMARTSM007173.1E-1468116IPR001005SANT/Myb domain
PfamPF002494.2E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2671119IPR009057Homeodomain-like
CDDcd001673.10E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAPKNASGPA KKAMNRGVWT QEEDQKLAQC IEAHGAKKWK TIAVKSGLNR CGKSCRLRWL  60
NYLRPNIKRG NISDEEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLCKKLNQ  120
EAEKPETSTA QETIVQNQFT EDSAMLQNKD VVNGSGSSDD SFDLDEFFNF SSGETFEFDW  180
INKYLELDQV SESTQRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141195109B-MYB
1h8a_C2e-291411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1223860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4907760.0AB490776.1 Lotus japonicus LjPAP mRNA for R2R3-MYB transcription factor LjPAP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335493.11e-104transcription factor MYB114-like
SwissprotP102905e-52MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLC0A1G81e-145C0A1G8_LOTJA; R2R3-MYB transcription factor LjPAP
STRINGXP_004508935.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-53myb domain protein 5
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Yoshida K, et al.
    Transcriptional control of the dihydroflavonol 4-reductase multigene family in Lotus japonicus.
    J. Plant Res., 2010. 123(6): p. 801-5
    [PMID:20339894]
  3. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  4. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  5. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  6. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  7. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  8. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]