PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1107610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 382aa    MW: 40163 Da    PI: 7.197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1107610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.8e-1099123126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f++ GtC+y  +C+FaH+
  Lj4g3v1107610.1  99 FKTKLCCKFRA-GTCPYVTNCNFAHS 123
                      69*********.*************8 PP
2zf-CCCH18.53.5e-06173198126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd+C+F H+
  Lj4g3v1107610.1 173 YKGRHCKKFYTEEGCPYGDSCTFLHD 198
                      77888********************7 PP
3zf-CCCH42.88.7e-14262287126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Lj4g3v1107610.1 262 WKTRICNKWEMTGYCPFGNKCHFAHG 287
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-896129IPR000571Zinc finger, CCCH-type
SMARTSM003560.00398124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13198125IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-799123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9170200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-7170200IPR000571Zinc finger, CCCH-type
SMARTSM003560.086172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-17257291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-10258292IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309261289IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10262287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDYGRDGNVV QIITTGGGGG GGGGGGGGDS WPGDQADWAT EDEYRYWNGN EDTAPSNGDG  60
RQSQSRSGSE PPSKKARGSS ATSSSASQER SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF  120
AHSIEELRRP PPNWQEIVAA HEEEKAVLMS EPREEFQIPT IGSYAGDVSQ RSYKGRHCKK  180
FYTEEGCPYG DSCTFLHDEQ SKNRESVAIS LGPGGYAGGG GGGGSGGGAG GGSGSGAVTP  240
TGAASAAASS AGNGANVKPS NWKTRICNKW EMTGYCPFGN KCHFAHGATE LHRYGGGLME  300
GESRDTASAI AADTKQGVPS KTLADNVVAS ATPIAHSDIY HIGVPSQRPS IVLQRPGQRT  360
LQKWKGPDKI SRIYGDWIDD IE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.5050.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1107610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096770.0AP009677.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT10E08, TM0570, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509736.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ84UQ31e-126C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1S2YTM70.0A0A1S2YTM7_CICAR; zinc finger CCCH domain-containing protein 12
STRINGXP_004509736.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-115C3H family protein