PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1062140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 24968.3 Da PI: 9.9395 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 15 | 35 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+k F++ + L+ H r+H Lj4g3v1062140.1 15 CAICKKAFTSVYALNGHTRMH 35 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.56E-6 | 11 | 38 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 12 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.6E-5 | 13 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.198 | 13 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAADNHNNVQ RFFLCAICKK AFTSVYALNG HTRMHSHSQK GNVVTAAKTN NNVFSVKTCN 60 GGLSERSSTT KPSFPTAKTT LFPQTLKRRR EITPCGNIWS GRRFNIAAAM AAADGDVDTF 120 CHSSSAVERS GVYLSDGSVF RSWPLSCKRI RKPRLSPRRR RRGNSCSEVE VDPLMLEAAE 180 TLMLLANGGD FCGDQAEFSS APEEQGNSTK RVKRMMMQGE EDMIMS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.11068 | 8e-56 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1062140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009701 | 0.0 | AP009701.1 Lotus japonicus genomic DNA, clone: LjT31G10, TM1742, complete sequence. |